BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2579.p
         (467 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311857|ref|YP_003775949.1| integral membrane protein [Herb...   716   0.0  

>gi|300311857|ref|YP_003775949.1| integral membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 467

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/467 (82%), Positives = 413/467 (88%), Gaps = 5/467 (1%)

Query: 1   MTTHSLQPAADGATVTAASRARPAVSAVQAVLLRLHFYIGLFVGPFILVAALTGTLYVLT 60
           MTTHS QPA+             + +A+QA+LLR+HFYIGLFVGPFILVAALTGTLYVLT
Sbjct: 6   MTTHSFQPASQAQAAARRQ----SATALQALLLRMHFYIGLFVGPFILVAALTGTLYVLT 61

Query: 61  PQIESHLYAQQLYNRTSGVARPLADQVAAAQAFLGPDARLFAVRPARAAGWNTRVMFSQS 120
           PQIESHLYA QL N + G A+PLA QV AA+AFLGP ARLFAVRPA+A GWNTRVMFSQ 
Sbjct: 62  PQIESHLYATQLRNASQGPAQPLAAQVQAARAFLGPQARLFAVRPAKAPGWNTRVMFSQP 121

Query: 121 GLGDSESRAIFVDPVSLQVRGDLIVYGTSGVLPLRTTLDYLHRNLMLGSLGRNYSELAAS 180
           GLGDSESRAIFVDPVSLQVRGDLIVYGTSGVLPLRTTLDYLHRNLMLG LGRNYSELAAS
Sbjct: 122 GLGDSESRAIFVDPVSLQVRGDLIVYGTSGVLPLRTTLDYLHRNLMLGELGRNYSELAAS 181

Query: 181 WLWLGALGGVWLWWRGRRPQRALRVARPLNVRRLHTLLGLWIVIGLVFFSATGLTWSRWA 240
           WLWLGALGGVWLWWR R   R ++ ARPL  RRLH L+GLWIVIGLVFFSATGLTWSRWA
Sbjct: 182 WLWLGALGGVWLWWRARTRGR-VQAARPLTARRLHALVGLWIVIGLVFFSATGLTWSRWA 240

Query: 241 GERVSQMRAQLGWITPSVSTQLQPGAPAMNMGEHADHMAAHGMSMSMPQVGDPARFDMVQ 300
           GERV+ MRAQLGWITPSVSTQLQPGAPAM+MGEHADHMAAHGM+M+MP V DPARFDMVQ
Sbjct: 241 GERVNLMRAQLGWITPSVSTQLQPGAPAMSMGEHADHMAAHGMAMAMPAVDDPARFDMVQ 300

Query: 301 HIARAGGIDAADIEIRPPRAADQAWVVREVDRSWPTQVDTVAIDADRMVITSRADFANFP 360
            IARAGGIDAA+IEIRPPRAA QAWVVREVDRSWPTQVDTVAIDADRM ITSRADFA+FP
Sbjct: 301 SIARAGGIDAAEIEIRPPRAAQQAWVVREVDRSWPTQVDTVAIDADRMRITSRADFASFP 360

Query: 361 LVAKLVRWGVDAHMGVLFGVANQILMALFGFALSGLIVLGYLMWWRRRPAAGASLAPLME 420
           L+AKL+RWGVDAHMGVLFGVANQILMA FG AL+GLI LGYLMWWRRRPAAGASLAPL  
Sbjct: 361 LIAKLIRWGVDAHMGVLFGVANQILMAAFGIALTGLIALGYLMWWRRRPAAGASLAPLSA 420

Query: 421 AVMRLPPLQRITLAVLALLLGWNLPLMGVSLLVFLLVDVIRYRRSLR 467
           A M++   QR ++ +LALLLGWNLPLMG SLLVFLLVDVIRYRR+ R
Sbjct: 421 AFMQMSLPQRASVLLLALLLGWNLPLMGASLLVFLLVDVIRYRRAGR 467


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,291,953
Number of extensions: 50358
Number of successful extensions: 253
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 2
Length of query: 467
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 378
Effective length of database: 1,198,455
Effective search space: 453015990
Effective search space used: 453015990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)