BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2578.p
         (277 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311856|ref|YP_003775948.1| 3',5'-cyclic-nucleotide phospho...   476   e-135

>gi|300311856|ref|YP_003775948.1| 3',5'-cyclic-nucleotide
           phosphodiesterase [Herbaspirillum seropedicae SmR1]
          Length = 279

 Score =  476 bits (1224), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/276 (88%), Positives = 258/276 (93%)

Query: 1   MRKLIHLSDLHFGRIDAHIIEPLIAQIHELRPDLIVVSGDLTQRARSKQFKQARQFLDAL 60
           MR++IHLSDLHFGR D  IIEPLIAQIHEL+PDL+VVSGDLTQRARS QF+QARQFLDAL
Sbjct: 1   MRRVIHLSDLHFGRTDPAIIEPLIAQIHELQPDLVVVSGDLTQRARSSQFRQARQFLDAL 60

Query: 61  PQPQLVVPGNHDVPLFNVAARLLQPLRQYKRHITPDLQPKYVDEEIAVVGINTARSLTIK 120
           P PQLVVPGNHDVPLFNVAARLLQPLR+YKRHITPDLQP YVD+EIAVVGINTARSLTI+
Sbjct: 61  PTPQLVVPGNHDVPLFNVAARLLQPLRKYKRHITPDLQPLYVDDEIAVVGINTARSLTIQ 120

Query: 121 DGRVNDRQIELARRELAAVGEHLVKIIVTHHPFDLPAGPQHHGLVGQAVPAMRAFALCGA 180
           DGRVNDRQIELARRELAAVG+HLVKIIVTHHPFDLP GPQHHGLVGQA+PAMRAFALCGA
Sbjct: 121 DGRVNDRQIELARRELAAVGDHLVKIIVTHHPFDLPPGPQHHGLVGQALPAMRAFALCGA 180

Query: 181 DLLLAGHVHTSSAVSSAGRYHIPGYSALVVQAGTATSTRGRGENNSFNVLQVEAHQIVVH 240
           DLLLAGHVH SSAVSSA RY I GYSALVVQAGTATSTRGRGE NSFNVLQ+EAHQIVVH
Sbjct: 181 DLLLAGHVHASSAVSSAARYRIAGYSALVVQAGTATSTRGRGEANSFNVLQIEAHQIVVH 240

Query: 241 RLGWESEQNSFALAASQTFVQRGSEWFEQKPDGQLA 276
           RLGW +E+ +F L ASQTFVQRGSEWFEQ  DGQ+A
Sbjct: 241 RLGWRAEERAFGLDASQTFVQRGSEWFEQLADGQIA 276


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 912,677
Number of extensions: 38507
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,222,130
Effective search space: 235871090
Effective search space used: 235871090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)