BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2576.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311854|ref|YP_003775946.1| type 2 phosphatidic acid phosph...   362   e-101

>gi|300311854|ref|YP_003775946.1| type 2 phosphatidic acid
           phosphatase family protein [Herbaspirillum seropedicae
           SmR1]
          Length = 257

 Score =  362 bits (930), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/263 (76%), Positives = 224/263 (85%), Gaps = 6/263 (2%)

Query: 1   MTDRPHPTDRPDRTLAPSATLTRFLRARLARDHHLGLPLTTGLMAVVSTVLLFALIAYEV 60
           MT+R     R     +P A   RFL ARLARDHHLGLPL+TGL+AV++T LLFALIAYEV
Sbjct: 1   MTERHLSAPR-----SPGA-FKRFLHARLARDHHLGLPLSTGLLAVLATALLFALIAYEV 54

Query: 61  STHGALTRLDQQLADWFNQHAFSPLTELVLGYTHLHGTIGVLVMGLALLWHMLQQRRWAW 120
            THGALTRLDQQLADWFNQ AFSPLTELVLGYTHLHGTIGVLVMG  LL HM++ R+W W
Sbjct: 55  HTHGALTRLDQQLADWFNQRAFSPLTELVLGYTHLHGTIGVLVMGGLLLRHMVRARQWPW 114

Query: 121 VVDLLLVLPGGMLCNFILKHLFARLRPSFDDPILVLHSYSFPSGHTIGATLLYAMLAAYL 180
           V+DLLLVLPGGML N++LKHLFARLRPSF+DP+LVLHSYSFPSGHTIGATLLY MLAAY+
Sbjct: 115 VIDLLLVLPGGMLLNYLLKHLFARLRPSFEDPLLVLHSYSFPSGHTIGATLLYTMLAAYV 174

Query: 181 LNQPSILAAIGARLKTGESGVRLSVIGVALLLVVLTGFSRVYLGAHFLSDVLGAMLLGTA 240
           LNQP++  A+  RL   + GV+L+VIG ALL+V LT FSRVYLGAHFLSDVLGAMLLGTA
Sbjct: 175 LNQPALSEALSRRLGGSQRGVQLAVIGAALLMVALTAFSRVYLGAHFLSDVLGAMLLGTA 234

Query: 241 WFALWSTLVFTWQRHYYGLPRSN 263
           WFALW+T+VFT QRHYYG  RSN
Sbjct: 235 WFALWTTVVFTLQRHYYGGTRSN 257


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.141    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 849,360
Number of extensions: 34937
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)