BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2575.p
         (226 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311853|ref|YP_003775945.1| Crp/Fnr family transcription re...   450   e-128
gi|300312495|ref|YP_003776587.1| Crp/Fnr family transcription re...   314   4e-87
gi|300311696|ref|YP_003775788.1| Crp/Fnr family transcription re...   139   3e-34

>gi|300311853|ref|YP_003775945.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  450 bits (1158), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 217/226 (96%), Positives = 221/226 (97%)

Query: 1   MHQLCLPMGLDQGDMQRLEQVINRRRKVKRDESLYRLNDKFDMLYAIRLGHFKTFQGNPN 60
           MHQLCLPMGLDQGDMQRLEQVINRRRKVKRDE+LYRLNDKFDMLYAIRLGHFKTFQ NPN
Sbjct: 30  MHQLCLPMGLDQGDMQRLEQVINRRRKVKRDETLYRLNDKFDMLYAIRLGHFKTFQHNPN 89

Query: 61  GGQQITGFQMAGELLGMDAIGAGHHLCEAVALEDSEVCEIPFARLEDLFRDMPTLLRQFH 120
           GGQQITGFQMAGELLGMDAIGAGHHLCEAVALEDSEVCEIPFA LEDLFRDMPTLLRQFH
Sbjct: 90  GGQQITGFQMAGELLGMDAIGAGHHLCEAVALEDSEVCEIPFASLEDLFRDMPTLLRQFH 149

Query: 121 RMMSLEISREQRVMLTLGSMTAQQKMAAFLLNLSSRYASRGYSSTRFQLRMTREEIGNYL 180
           RMMSLEISREQRVMLTLGSMTAQQKMAAFLLNLSSRY SRGYSSTRFQLRMTREEIGNYL
Sbjct: 150 RMMSLEISREQRVMLTLGSMTAQQKMAAFLLNLSSRYMSRGYSSTRFQLRMTREEIGNYL 209

Query: 181 GLAVESVSRLLTNFKKTGVIEVSHRDVELCDLVALRAIALGNDPCA 226
           GLAVESVSRLLTNFKK+GVIEV+HRDVELCDL  LRA+ALGNDPCA
Sbjct: 210 GLAVESVSRLLTNFKKSGVIEVNHRDVELCDLPTLRAVALGNDPCA 255


>gi|300312495|ref|YP_003776587.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score =  314 bits (804), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 147/225 (65%), Positives = 185/225 (82%), Gaps = 1/225 (0%)

Query: 1   MHQLCLPMGLDQGDMQRLEQVINRRRKVKRDESLYRLNDKFDMLYAIRLGHFKTFQGNPN 60
           MHQLCLPMGLD+ DM+RL+++I RR KV RD+ LYR+ D+F  LYA+R+GHFKT+Q N +
Sbjct: 46  MHQLCLPMGLDESDMKRLDKIIGRR-KVARDDFLYRIGDRFTALYAVRVGHFKTYQENLD 104

Query: 61  GGQQITGFQMAGELLGMDAIGAGHHLCEAVALEDSEVCEIPFARLEDLFRDMPTLLRQFH 120
           G +QITGFQM GELLGMDAI    H C+AVAL+DSEVCEIPFARLE LF  +P LLR FH
Sbjct: 105 GDRQITGFQMPGELLGMDAISTEQHQCDAVALQDSEVCEIPFARLEQLFGQIPHLLRHFH 164

Query: 121 RMMSLEISREQRVMLTLGSMTAQQKMAAFLLNLSSRYASRGYSSTRFQLRMTREEIGNYL 180
           R+MS EI+ EQ V++ LG+M A+Q+ AAFL+NLSSRYA+RGYSSTRFQLRMTR+++GNYL
Sbjct: 165 RIMSHEITSEQNVIMLLGNMRAEQRFAAFLVNLSSRYAARGYSSTRFQLRMTRQDVGNYL 224

Query: 181 GLAVESVSRLLTNFKKTGVIEVSHRDVELCDLVALRAIALGNDPC 225
           GL +ES+SRL++ F+K G++ V  RDVE+ DL AL+ +A G D C
Sbjct: 225 GLTIESISRLISKFRKQGLLAVEQRDVEVVDLAALKRLAAGVDAC 269


>gi|300311696|ref|YP_003775788.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 272

 Score =  139 bits (349), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/218 (39%), Positives = 134/218 (61%), Gaps = 3/218 (1%)

Query: 5   CLPMGLDQGDMQRLEQVINRRRKVKRDESLYRLNDKFDMLYAIRLGHFKTFQGNPNGGQQ 64
           C P  L   +  + EQ++ RRR+V R E  YR +D+   ++ +RLG FKT + +  GG  
Sbjct: 27  CFPHDLSPEETAQFEQLVVRRRRVLRGEFAYRAHDECSKIFIVRLGSFKTVRVSRYGGMD 86

Query: 65  ITGFQMAGELLGMDAIGAGHHLCEAVALEDSEVCEIPFARLEDLFRDMPTLLRQFHRMMS 124
           +  F   G+LLG++      +  + +ALEDS++CE+ F  LE+L R +P L +Q  R +S
Sbjct: 87  VIAFHHTGDLLGIEGASHSAYEVDTIALEDSQICELSFVGLEELSRKIPRLHQQVWRRLS 146

Query: 125 LEISREQRVMLTLGSMTAQQKMAAFLLNLSSRYASR-GYSSTRFQLRMTREEIGNYLGLA 183
            E++  Q+  L L +  ++Q+ A FLL+L SR +SR G +ST F LRM+R +IG +LGL 
Sbjct: 147 NEVTLMQQQSLLLKA-RSEQRFAFFLLDL-SRISSRCGNASTEFSLRMSRTDIGLFLGLT 204

Query: 184 VESVSRLLTNFKKTGVIEVSHRDVELCDLVALRAIALG 221
            ES+SRL++ F+K G+I+VS R V +     L  +A G
Sbjct: 205 NESMSRLISKFRKAGLIDVSVRKVRVLSPSTLEELASG 242


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 655,095
Number of extensions: 25817
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 3
Length of query: 226
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,231,600
Effective search space: 177350400
Effective search space used: 177350400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)