BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2573.p
         (416 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311851|ref|YP_003775943.1| major facilitator superfamily p...   614   e-177

>gi|300311851|ref|YP_003775943.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score =  614 bits (1584), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 345/415 (83%), Positives = 370/415 (89%), Gaps = 5/415 (1%)

Query: 4   TPAIPSTIPP--GSHNAAILALCQGLFTCAISIDLTLTALTGWQLAPDKALATLPFALIT 61
           + A+P++ P   G+ NA +LALCQGLFTCAISIDLTLTALTGWQLAPDK+LATLPFALIT
Sbjct: 6   STALPASAPDASGARNARVLALCQGLFTCAISIDLTLTALTGWQLAPDKSLATLPFALIT 65

Query: 62  VAGAVVTWFAAFLIQRLGRRWAFVLGAASCCVGGLISVWSVFHAQFWSFCAGTALVGVFQ 121
           VAGAVVTWFAAFLIQRLGRRW+FVLGAASCCVGGL+SVWSV+   FWSFCAGTALVGVFQ
Sbjct: 66  VAGAVVTWFAAFLIQRLGRRWSFVLGAASCCVGGLVSVWSVWQGHFWSFCAGTALVGVFQ 125

Query: 122 AFAQYYRLAAADAVSEAAKSRAISTVLAGGVIAALVGPALAAWSKDWFPTALFAGAYLVV 181
           AFAQYYRLAAADAV EAAKSRAI+TVLAGGVIAALVGPALAAWSKDW PTALFAGAYLVV
Sbjct: 126 AFAQYYRLAAADAVPEAAKSRAIATVLAGGVIAALVGPALAAWSKDWIPTALFAGAYLVV 185

Query: 182 ASMGLLSVLVLLLFYRDQEQPGAAAAMTSAEAAPPRPLTRIARTPVFLASVANNVAGSMV 241
           A+MGLLSVL LLLFYRDQ     AA  T ++ AP R L +I RTPVFLASVANNVAGSMV
Sbjct: 186 AAMGLLSVLALLLFYRDQP---VAAVRTESDGAPARALGQIVRTPVFLASVANNVAGSMV 242

Query: 242 MMFIMTAAPLAAVACHHGIDDGAAIIQWHLIGMYAPSFFAGRLIQRFGLGSVLLAGLGMN 301
           MMFIMTAAPLAAVACHHGIDDGAAIIQWHL+GMYAPSFFAGRL+QR GLG VLLAGL MN
Sbjct: 243 MMFIMTAAPLAAVACHHGIDDGAAIIQWHLMGMYAPSFFAGRLVQRVGLGPVLLAGLAMN 302

Query: 302 LGCALIAMCSTTLPAFYVALLLLGVGWNFMFVGGTTLLAQSYTPSERAKTQGLAELMRYA 361
           LGCA++AM STTLPAFY+ALLLLGVGWNFMFVGGTTLLAQSY PSERAKTQG +EL+RYA
Sbjct: 303 LGCAVVAMLSTTLPAFYLALLLLGVGWNFMFVGGTTLLAQSYAPSERAKTQGFSELLRYA 362

Query: 362 ATALATLGAGPLLARFGWESLNAAILPVLLVSALFTLRWMLAQRTQGAALAGGLR 416
           ATALATLGAGPLLARFGW++LN AILPVLL+SAL TL WM  QR        GLR
Sbjct: 363 ATALATLGAGPLLARFGWQTLNLAILPVLLLSALATLHWMRGQRRAATLPPAGLR 417


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,207,437
Number of extensions: 46641
Number of successful extensions: 337
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 328
Effective length of database: 1,203,190
Effective search space: 394646320
Effective search space used: 394646320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)