BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2567.p
         (286 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspiril...   524   e-150
gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspiril...   122   4e-29
gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspiril...    77   1e-15

>gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 289

 Score =  524 bits (1350), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 260/287 (90%), Positives = 266/287 (92%), Gaps = 1/287 (0%)

Query: 1   MSTP-YTRQIERLVKGIATQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGF 59
           MSTP YTRQIERLV GI TQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGF
Sbjct: 3   MSTPLYTRQIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGF 62

Query: 60  PDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQEDGLMSG 119
           PDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQE+GLMSG
Sbjct: 63  PDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLMSG 122

Query: 120 FQLWVNLAAKDKMTTPGYQDIPAAGIPETSPQPGVKVRVLAGSAFGVDGAIRRETTEPLY 179
           FQLWVNLA KDKMT PGYQDIPAAGIPETSPQPGV+VRVLAGSAFG DGAIRR TTEPLY
Sbjct: 123 FQLWVNLAGKDKMTEPGYQDIPAAGIPETSPQPGVRVRVLAGSAFGTDGAIRRATTEPLY 182

Query: 180 LDLHLEAGVTLDLPIAATHNAFLYVYEGRLAVGPQGSEARLAEAGRMALLSNVADAAGVT 239
           LDL LEAG TL LPI ATHNAFLYVYEG LAVG    E R AEAGRMA+LSNV  +AGVT
Sbjct: 183 LDLALEAGTTLALPIPATHNAFLYVYEGALAVGAADGETRPAEAGRMAVLSNVPGSAGVT 242

Query: 240 VRAEQASRFLLIAGRPLNEPIAQWGPFVMNTREQVEEAIDDFRAGRF 286
           VRAEQASRFLLIAG+PLNEPI QWGPFVMNTREQVE+AIDDFRAGRF
Sbjct: 243 VRAEQASRFLLIAGKPLNEPITQWGPFVMNTREQVEQAIDDFRAGRF 289


>gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 292

 Score =  122 bits (305), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/271 (33%), Positives = 139/271 (51%), Gaps = 25/271 (9%)

Query: 23  GVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGFPD-----HPHRGFETVTYMLAGR 77
           G  + R+L     R + PF+  D      P ++ AG  +     HPH G  TVTY+ +G 
Sbjct: 16  GFPVRRLLPAAAARTVGPFVFFDHM---GPVEFDAGTTEGDVRPHPHIGLATVTYLFSGA 72

Query: 78  MRHRDNAGNEGLLEPGGMQWMTAGRGLVHSE-LPE---QEDGLMSGFQLWVNLAAKDKMT 133
           M HRD+ G    + PG + WM AGRG+VHSE +P+   ++   + G Q+WV L A  +  
Sbjct: 73  MMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPVHGLQMWVALPADQEDG 132

Query: 134 TPGYQDIPAAGIPETSPQPGVKVRVLAGSAFGVDGAIRRETTEP-LYLDLHLEAGVTLDL 192
            P +    A  +P+T    G ++ VLAGSAFGV   +  +T  P LY+      G TL++
Sbjct: 133 APLFHHYAADEMPDTVVG-GARLHVLAGSAFGVSSPV--QTASPTLYVAGSTTDGATLEI 189

Query: 193 PIAATHNAFLYVYEGRLAVGPQGSEARLAEAGRMALLSNVADAAGVTVRAEQASRFLLIA 252
                  A +YV  G +++     +    EAG +A+L      A VT++AE  + F+++ 
Sbjct: 190 AAEVQERA-VYVVRGEVSL-----DGERLEAGTLAILE---PGAAVTLQAEGETVFMILG 240

Query: 253 GRPLNEPIAQWGPFVMNTREQVEEAIDDFRA 283
           G PL+ P   W  FV  +R+++E A   + A
Sbjct: 241 GAPLDGPRFVWWNFVSTSRDKIEAAKQAWNA 271


>gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 233

 Score = 77.0 bits (188), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 11/162 (6%)

Query: 58  GFPDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQEDGLM 117
           GF  H HR  E ++Y+L G + H+D+ GN  ++ PG +Q M+AG G+ HSE    +DG  
Sbjct: 53  GFGTHGHRDMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEYNHSQDGTT 112

Query: 118 SGFQLWVNLAAKDKM-TTPGYQDIPAAGIPETSPQPGVKVRVLAGSAFGVDGAIRRETTE 176
              Q+W+     D+    PGYQ+   +   +       K+R++A SA G DG++      
Sbjct: 113 HFLQIWI---MPDRAGAEPGYQEAHFSAADKDG-----KLRLVA-SADGRDGSVSMNQDA 163

Query: 177 PLYLDLHLEAGVTLDLPIAATHNAFLYVYEGRLAVGPQGSEA 218
            LY  L  +   T +  +      +++V  G+++V  Q  EA
Sbjct: 164 QLYAGL-FDGAQTAEYTLPQGRLGYVHVARGKISVNGQALEA 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,031,026
Number of extensions: 48929
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 3
Length of query: 286
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,222,130
Effective search space: 246870260
Effective search space used: 246870260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)