BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2566.p
         (292 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspiril...   542   e-155
gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspiril...   123   2e-29
gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspiril...    58   7e-10

>gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 292

 Score =  542 bits (1397), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 264/292 (90%), Positives = 279/292 (95%)

Query: 1   MSNILHKIQGLTRDIGFPVRRLLPAAAARTVGPFVFFDHMGPVEFDAGTTEGDVRPHPHI 60
           MSNI HKI GLTRDIGFPVRRLLPAAAARTVGPFVFFDHMGPVEFDAGTTEGDVRPHPHI
Sbjct: 1   MSNIRHKIHGLTRDIGFPVRRLLPAAAARTVGPFVFFDHMGPVEFDAGTTEGDVRPHPHI 60

Query: 61  GLATVTYLFSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPVHGLQ 120
           GLATVTYLFSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPVHGLQ
Sbjct: 61  GLATVTYLFSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPVHGLQ 120

Query: 121 MWVALPAEQEEGEPLFRHYAAQEMPETTVGGARLHVLAGSAFGVSSPVITASPTLYVAGS 180
           MWVALPA+QE+G PLF HYAA EMP+T VGGARLHVLAGSAFGVSSPV TASPTLYVAGS
Sbjct: 121 MWVALPADQEDGAPLFHHYAADEMPDTVVGGARLHVLAGSAFGVSSPVQTASPTLYVAGS 180

Query: 181 TTDGAELEIAAEVQERALYVVRGDVTLDGERLEAGTLAILQPGASVAFKAVGESVFMILG 240
           TTDGA LEIAAEVQERA+YVVRG+V+LDGERLEAGTLAIL+PGA+V  +A GE+VFMILG
Sbjct: 181 TTDGATLEIAAEVQERAVYVVRGEVSLDGERLEAGTLAILEPGAAVTLQAEGETVFMILG 240

Query: 241 GAPLDGPRFVWWNFVATSRDKIEAAKEAWNSRNKQVFPDIPGETEWIPLPAH 292
           GAPLDGPRFVWWNFV+TSRDKIEAAK+AWN+R+K VFPDIPGE+EWIPLP H
Sbjct: 241 GAPLDGPRFVWWNFVSTSRDKIEAAKQAWNARDKSVFPDIPGESEWIPLPTH 292


>gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 289

 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/270 (34%), Positives = 140/270 (51%), Gaps = 23/270 (8%)

Query: 16  GFPVRRLLPAAAARTVGPFVFFDHMG---PVEFDAGTTEGDVRPHPHIGLATVTYLFSGA 72
           G  + R+L     R + PF+  D      P ++ AG  +     HPH G  TVTY+ +G 
Sbjct: 26  GVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGFPD-----HPHRGFETVTYMLAGR 80

Query: 73  MMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPVHGLQMWVALPAEQEEG 132
           M HRD+ G    + PG + WM AGRG+VHSE +P+   ++   + G Q+WV L  + +  
Sbjct: 81  MRHRDNAGNEGLLEPGGMQWMTAGRGLVHSE-LPE---QENGLMSGFQLWVNLAGKDKMT 136

Query: 133 EPLFRHYAAQEMPETTVG-GARLHVLAGSAFGVSSPVITASPT-LYVAGSTTDGAELEIA 190
           EP ++   A  +PET+   G R+ VLAGSAFG    +  A+   LY+  +   G  L + 
Sbjct: 137 EPGYQDIPAAGIPETSPQPGVRVRVLAGSAFGTDGAIRRATTEPLYLDLALEAGTTLALP 196

Query: 191 AEVQERA-LYVVRGDVTL---DGER--LEAGTLAILQ--PG-ASVAFKAVGESVFMILGG 241
                 A LYV  G + +   DGE    EAG +A+L   PG A V  +A   S F+++ G
Sbjct: 197 IPATHNAFLYVYEGALAVGAADGETRPAEAGRMAVLSNVPGSAGVTVRAEQASRFLLIAG 256

Query: 242 APLDGPRFVWWNFVATSRDKIEAAKEAWNS 271
            PL+ P   W  FV  +R+++E A + + +
Sbjct: 257 KPLNEPITQWGPFVMNTREQVEQAIDDFRA 286


>gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 233

 Score = 58.2 bits (139), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 18/168 (10%)

Query: 57  HPHIGLATVTYLFSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPV 116
           H H  +  ++Y+  G + H+DS+G    I PG V  M+AG G+ HSE        Q    
Sbjct: 57  HGHRDMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEY----NHSQDGTT 112

Query: 117 HGLQMWVALPAEQEEGEPLFR--HYAAQEMPETTVGGARLHVLAGSAFGVSSPVITASPT 174
           H LQ+W+ +P ++   EP ++  H++A +         +L ++A +     S  +     
Sbjct: 113 HFLQIWI-MP-DRAGAEPGYQEAHFSAADKD------GKLRLVASADGRDGSVSMNQDAQ 164

Query: 175 LYVAGSTTDGAELEIAAEVQERALY--VVRGDVTLDGERLEAGTLAIL 220
           LY      DGA+       Q R  Y  V RG ++++G+ LEAG    L
Sbjct: 165 LYAG--LFDGAQTAEYTLPQGRLGYVHVARGKISVNGQALEAGDAVKL 210


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,041,060
Number of extensions: 47269
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 3
Length of query: 292
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 208
Effective length of database: 1,222,130
Effective search space: 254203040
Effective search space used: 254203040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)