BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2564.p
         (394 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311844|ref|YP_003775936.1| methylase of polypeptide chain ...   662   0.0  

>gi|300311844|ref|YP_003775936.1| methylase of polypeptide chain
           release factors protein [Herbaspirillum seropedicae
           SmR1]
          Length = 395

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/398 (83%), Positives = 353/398 (88%), Gaps = 9/398 (2%)

Query: 1   MTSHDDSLAAAVAYLNWQDGHTQQQLRWHSEAGNPAPKRVVLADDQIAADTAYRLACEGT 60
           MT HDDSLA    +L WQ G TQQQLRWHSEAGNP PKRV  ADDQIAADTAY+LACEG 
Sbjct: 1   MTPHDDSLA----WLTWQTGSTQQQLRWHSEAGNPPPKRVQEADDQIAADTAYKLACEGC 56

Query: 61  GLLWRGDFQNARQLLQALGRRVDRARERASTKSRGQPATSDSPAQA-----FHHHRQMQA 115
           GLLWRGDFQNARQLLQALGRR+D+ARERA  K++ +PA   +         FH HRQMQA
Sbjct: 57  GLLWRGDFQNARQLLQALGRRIDKARERALAKAKDKPAAGVAAGAGAAAQAFHQHRQMQA 116

Query: 116 QRARILGMLLIPLDPGFVVPLRRAPDVQAACHQTYGAALAGEAFAVSLRELQGLIGAHEW 175
           QRARILGMLLIP++PGFVVPLRRAPDVQAAC + YG  LA  AFAVSLRELQGLIGAHEW
Sbjct: 117 QRARILGMLLIPVEPGFVVPLRRAPDVQAACREAYGPELADTAFAVSLRELQGLIGAHEW 176

Query: 176 RKKGVEIGALGARIHPWYGVFSPVRGEYVDLVAQAPLPATELAFDIGVGSGVLSAVLAQR 235
           RKKGVEIGALGARIHPWYGVFSPVRGEYVDLVAQA LP+TELAFDIGVGSGVLSAVLAQR
Sbjct: 177 RKKGVEIGALGARIHPWYGVFSPVRGEYVDLVAQAALPSTELAFDIGVGSGVLSAVLAQR 236

Query: 236 GVRKIVATDMDPRALACARENLQALGALEQVELQQADLFPPGRAPLIVCNPPWLPARPSS 295
           GVRKIVATDMDPRALACAR+NLQ LG  +QV+LQ+ADLFP GRAPL+VCNPPWLPARPSS
Sbjct: 237 GVRKIVATDMDPRALACARQNLQQLGLHQQVQLQEADLFPEGRAPLVVCNPPWLPARPSS 296

Query: 296 PIEQAVYDPESRMLLGFLNGLAAHLTPQGEGWLIMSDFAEHLGLRAPGMLAEAIAQAGLT 355
           PIE AVYDP+SRMLLGFLNGLA HLTPQGEGWLIMSDFAEHLGLRAPGMLAEAIA+AGL 
Sbjct: 297 PIEHAVYDPDSRMLLGFLNGLAQHLTPQGEGWLIMSDFAEHLGLRAPGMLAEAIAKAGLV 356

Query: 356 VVARHDIKPRHGKAADREDPLHAARSKETTTLWRLRAR 393
           V  RHDIKPRHGKA DR+DPLHAARSKETTTLWRLRA+
Sbjct: 357 VAGRHDIKPRHGKAVDRDDPLHAARSKETTTLWRLRAQ 394


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,430,700
Number of extensions: 67371
Number of successful extensions: 221
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 307
Effective length of database: 1,207,925
Effective search space: 370832975
Effective search space used: 370832975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)