BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2562.p (465 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311843|ref|YP_003775935.1| transmembrane sensor histidine ... 853 0.0 gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 129 7e-31 gi|300311751|ref|YP_003775843.1| signal transduction histidine k... 125 7e-30 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 118 1e-27 gi|300314014|ref|YP_003778106.1| two component sensor histidine ... 116 3e-27 >gi|300311843|ref|YP_003775935.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 468 Score = 853 bits (2203), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/462 (91%), Positives = 436/462 (94%) Query: 1 MHDRPQQVLAGPSLYTRLVVRVGAVLLVSAAALLIAIWISTQLAARQAYDRILAGSALQI 60 M R Q V+AG SLYTRLV+RVGAVLLVSAAALLIAIWISTQ AAR+AYDRILAGSALQI Sbjct: 1 MQGRTQHVIAGRSLYTRLVIRVGAVLLVSAAALLIAIWISTQFAAREAYDRILAGSALQI 60 Query: 61 AENTWYDHGEVNVDVPLAALSMLGTGDHAIYVVFDPRGRVIAGDAEFRPEIPWSELEQGP 120 AENTWYDHGEVNVDVPLAALSMLGTGDHAIY VFDPRGRVIAGDAEFRPEIPW ELEQGP Sbjct: 61 AENTWYDHGEVNVDVPLAALSMLGTGDHAIYAVFDPRGRVIAGDAEFRPEIPWQELEQGP 120 Query: 121 LLRDGQYLGTPVRMAIIGRRMPVNSPHPWAVIVLAQTNNARMSFAQSLGSKALMVIVAMS 180 LLRDGQYLGTPVRMAIIGRRMPV PHPWAVIVLAQTNNARMSFAQSLGS+AL+VIVAMS Sbjct: 121 LLRDGQYLGTPVRMAIIGRRMPVEGPHPWAVIVLAQTNNARMSFAQSLGSRALVVIVAMS 180 Query: 181 VLTLVAAMFTLYQALAPLKRIEAAIRERDLNDLSPLSLTVPAETHALVSAINAFMQRLEV 240 VLTLVAAMFTLYQALAPLKRIEAAIRERDLNDLSPL LTVPAETHALVSAINAFMQRL V Sbjct: 181 VLTLVAAMFTLYQALAPLKRIEAAIRERDLNDLSPLVLTVPAETHALVSAINAFMQRLAV 240 Query: 241 HRATMRRVIGDAAHQLRTPVTALVAQMELLANESNEDKRQRHLALLRERTGNLGALVNQL 300 HR+TMRRVIGDAAHQLRTPVTALVAQMELLA E NE+KRQRHL LLRERT NLGALVNQL Sbjct: 241 HRSTMRRVIGDAAHQLRTPVTALVAQMELLATEDNEEKRQRHLTLLRERTRNLGALVNQL 300 Query: 301 INHAMVQHRNDSSLQAPIDLGELVRSQMTEVLSNRSRTPHDLALDVPSLPCLIRGDTIAL 360 INHAMVQHRNDSSLQA IDLGELVRSQMTEVLSNRSRTPHDL+LDVP LPCLIRGD I+L Sbjct: 301 INHAMVQHRNDSSLQARIDLGELVRSQMTEVLSNRSRTPHDLSLDVPPLPCLIRGDAISL 360 Query: 361 GEAIKNILDNALQYGAPGLLQVRLDSDGQRHQLRFIDDGPGIAAKDWERLRKPFAPRSEN 420 GEAIKNILDNALQYGAPGLLQVRL+SDGQRH LRFIDDGPGI A DWERLRKPF+PR E Sbjct: 361 GEAIKNILDNALQYGAPGLLQVRLESDGQRHWLRFIDDGPGIPAADWERLRKPFSPRGEQ 420 Query: 421 RMGASLGLSIVEEVMRAHGAEMRFAYLPNGYFSVVLDFPAWQ 462 RMGASLGLSIVEEVMRAHG E+RFAYLP G+F+VVLDFPAWQ Sbjct: 421 RMGASLGLSIVEEVMRAHGGELRFAYLPVGHFAVVLDFPAWQ 462 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 129 bits (323), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 111/425 (26%), Positives = 197/425 (46%), Gaps = 14/425 (3%) Query: 22 VGAVLLVSAAALLIAIWISTQLAARQAYDRILAGSALQIAENTWYDHGEVNVDVPLAALS 81 + +LLV+ + W++ L A+ A+D+ L S + + ++ A Sbjct: 17 IAPLLLVNLIGAGLTYWLA-WLPAQHAFDQNLMDSTWGLYAQVRHRQERTTAELTQQAEQ 75 Query: 82 MLGTG--DHAIYVVFDPRGRVIAGDAEFRPEIPWSELEQGPLLRDGQYLGTPVRMAIIGR 139 +L + D + V + G+++ GD F P++P S++ P+ DG+ G PVR+A + Sbjct: 76 ILRSNHSDTTFFAVRNTEGQIVVGDKGF-PQLPASDVFDRPINYDGEMRGEPVRIAAMQV 134 Query: 140 RMPVNSPHPWAVIVLAQTNNARMSFAQSLGSKALMVIVAMSVLTLVAAMFTLYQALAPLK 199 R V + W + +A+T R ++ L++ A++ ++ + + + L PLK Sbjct: 135 R--VKNGVIW--VAVAETIRKRDRAHYTILLSFLVLDGALTFASIFVVLVAVRRGLRPLK 190 Query: 200 RIEAAIRERDLNDLSPLS-LTVPAETHALVSAINAFMQRLEVHRATMRRVIGDAAHQLRT 258 ++ + +RD L + P E L+ A+N M R+ + + D AHQLRT Sbjct: 191 SLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQAQQNFMADVAHQLRT 250 Query: 259 PVTALVAQMELLANE-SNEDKRQRHLALLRERTGNLGALVNQLINHAMVQ-HRNDSSLQA 316 P+T L Q+ELL ++ ++ R LA++ + QL+ A + +S Sbjct: 251 PLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGLFESRKLE 310 Query: 317 PIDLGELVRSQMTEVLSNRSRTPHDLALDVPSLPCLIRGDTIALGEAIKNILDNALQYGA 376 + L +LV + + + DL D+ P +RGD L + I N++DNA++Y Sbjct: 311 ELSLDKLVEESVQHFIEEADKKRIDLGFDLR--PARLRGDRFLLSDLIDNLIDNAVRYSP 368 Query: 377 P-GLLQVRLDSDGQRHQLRFIDDGPGIAAKDWERLRKPFAPRSENRMGASLGLSIVEEVM 435 P G + VR + L D GPGIA + E + F ++ G+ LGL+IV E+ Sbjct: 369 PHGTVTVRCLEEQDATVLSVEDSGPGIAPEHRELIFDRFYRANDKVAGSGLGLAIVREIA 428 Query: 436 RAHGA 440 HG Sbjct: 429 HDHGG 433 >gi|300311751|ref|YP_003775843.1| signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 446 Score = 125 bits (314), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 103/298 (34%), Positives = 154/298 (51%), Gaps = 10/298 (3%) Query: 152 IVLAQTNNARMSFAQSLGSKALMVIVAMSVLTLVAAMFTLYQALAPLKRIEAAIRERDLN 211 + LAQ + R AQ +AL V ++ L L+A + + APL+ + I R + Sbjct: 134 LALAQETDLRQHIAQRSAWRALWPFVVLAPLLLLAVQRIIKRLFAPLQALRQEIDSRGED 193 Query: 212 DLSPLS-LTVPAETHALVSAINAFMQRLEVHRATMRRVIGDAAHQLRTPVTALVAQMELL 270 DL P++ +P E A V+AIN + R+E A RR + DAAH+LRTP+TAL Q E L Sbjct: 194 DLQPIAERLLPREVQAFVAAINGLLARVEAGMAAQRRFVADAAHELRTPLTALSLQAERL 253 Query: 271 ANES-NEDKRQRHLALLRERTGNLGA--LVNQLINHAMVQHRNDSSLQAPIDLGELVRSQ 327 +E R+R L R TG A LV QL+ A Q ++LQ P L +++R Sbjct: 254 GRAPMSETARER---LTRLETGLQRARQLVTQLLALARAQTPAGAALQ-PCSLHQVLREV 309 Query: 328 MTEVLSNRSRTPHDLALDVPSLPCLIRGDTIALGEAIKNILDNALQYG-APGLLQVRLDS 386 + E+L DL LD C++ L + ++N++DNA+ Y A G + +R++ Sbjct: 310 IEELLPLAQCKQIDLGLDGERDACVLT-QPQELAQLLRNLIDNAIAYTPAGGAVSLRMER 368 Query: 387 DGQRHQLRFIDDGPGIAAKDWERLRKPFAPRSENRMGASLGLSIVEEVMRAHGAEMRF 444 Q L D GPGIAA + ER+ +PF + G+ LGL+IV+ + R G +R Sbjct: 369 HAQWVALEICDTGPGIAASERERVFQPFYRIDPSGQGSGLGLAIVQSIARRLGVTLRL 426 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 96/310 (30%), Positives = 149/310 (48%), Gaps = 12/310 (3%) Query: 150 AVIVLAQTNNARMSFAQSLGSKALMVIVAMSVLTLVAAMFTLYQALAPLKRIEAAIRERD 209 A + + +T R A + ++ + + L F L + L+PL ++ IR R Sbjct: 53 ATVQVGETLEKRAQLANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQRIRARR 112 Query: 210 LNDLSPL-SLTVPAETHALVSAINAFMQRLEVHRATMRRVIGDAAHQLRTPVTALVAQME 268 +DLSP+ S VP E LV ++N + RL A +R I DAAHQ++TP+ + Q E Sbjct: 113 PDDLSPIDSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSE 172 Query: 269 LLANESNEDKRQRHLALLRERTGNLGALVNQLINHAMVQH-RNDSSLQAPIDLGELVRSQ 327 L + ++ +R L L + + LVNQL++ A ++ ++ S P++L EL RS Sbjct: 173 LALRQDDQVDVRRSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGMIPVELNELARSV 232 Query: 328 MTEVLSNRSRTPHDLALDVPSLPCLIRGDTIALGEAIKNILDNALQY---GAPGLLQVRL 384 + + + DL + P P LI G+ + L E + N+LDNAL Y G + VR Sbjct: 233 VQDWVPMSFTQRIDLGFEQPDHPILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRA 292 Query: 385 DSD--GQRHQLRFIDDGPGIA----AKDWERLRKPFAPRSENRMGASLGLSIVEEVMRAH 438 +D G L D+GPGI A +ER + S G LGL+IV E+ + H Sbjct: 293 RTDEGGGLAILEVEDNGPGIPVAERANVFERFYRILGTPSTGS-GLGLGLAIVREIAQQH 351 Query: 439 GAEMRFAYLP 448 A + P Sbjct: 352 EAALEITSNP 361 >gi|300314014|ref|YP_003778106.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 467 Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 117/424 (27%), Positives = 202/424 (47%), Gaps = 23/424 (5%) Query: 27 LVSAAALLIAI-----WISTQLAARQAYDRILAGSALQIAENTWYDHGEVNVDVPLAALS 81 ++S AL I I + +T + AYDR+L S I + ++GE+ +P AAL Sbjct: 19 IISPIALFIIIDSFSLYRNTLESVNTAYDRMLIASVHSIGDLLRIENGELKASLPYAALE 78 Query: 82 MLGTGDHA---IYVVFDPRGRVIAGDAEFRPEIPWSELEQ-GPLL---RDGQYLGTPVRM 134 + D++ IY + G+ GDA+ ++ E P L + Y G PVR+ Sbjct: 79 IY-EADYSSRMIYRINGLDGKFFDGDADLPSYKGKADKEAIYPALAHIYEDTYNGVPVRV 137 Query: 135 AIIGRRMPVNSPHPWAVIVLAQTNNARMSFAQSLGSKALMVIVAMSVLTLVAAMFTLYQA 194 A + + + N P A++ +A+T R + A+ + + L+ A+ V+ + ++ + +A Sbjct: 138 AALFQPVVTNDPRGAALVQVAETMENRSALARKIFWETLIRQAALLVVIVSVTLYVVRRA 197 Query: 195 LAPLKRIEAAIRERDLNDLSPLSLTV-PAETHALVSAINAFMQRLEVHRATMRRVIGDAA 253 L P+ + + ER +DLSP++ + P E + A+N M RL +R + +A+ Sbjct: 198 LQPVDALRRQLDERPADDLSPVAPPMAPRELQPFIDALNQLMARLRRLLDHQQRFVANAS 257 Query: 254 HQLRTPVTALVAQMEL-LANESNEDKRQRHLALLRERTGNLGALVNQLINHAMVQHRNDS 312 HQLRTP+ L Q++ L ++ + ++ ER L NQL++ A V+ Sbjct: 258 HQLRTPLAVLKTQLQSGLRGDAPAPVIWQEMSGTVERATTLA---NQLLSLAKVEQIRGR 314 Query: 313 SLQAPIDLGELVRSQMTEVLSNRSRTPHDLALDVPSLPCLIRGDTIALGEAIKNILDNAL 372 Q DLG L R T V + DL ++ + L+ G +GE I N+L NA+ Sbjct: 315 GAQEVCDLGMLARE--TAVDLSPLIAEKDLDFELEAEKILVMGHPWMIGELISNLLHNAI 372 Query: 373 QYG-APGLLQVRLDSDGQRHQLRFIDDGPGIAAKDWERLRKPFAPRSENRMGASLGLSIV 431 ++ A G L +R+ + +L D G GI + E + K F+ + G LGL+I Sbjct: 373 RHTPAQGRLGIRITAREDVAELLIWDSGEGIDDQAMENVFKAFSSNVSSAGG--LGLTIC 430 Query: 432 EEVM 435 E++ Sbjct: 431 GEIV 434 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,450,979 Number of extensions: 62866 Number of successful extensions: 301 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 263 Number of HSP's successfully gapped: 27 Length of query: 465 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 376 Effective length of database: 1,198,455 Effective search space: 450619080 Effective search space used: 450619080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)