BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2560.p (263 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate A... 531 e-152 gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate A... 334 4e-93 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 213 1e-56 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 182 2e-47 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 179 3e-46 >gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 531 bits (1367), Expect = e-152, Method: Compositional matrix adjust. Identities = 257/263 (97%), Positives = 259/263 (98%) Query: 1 MSDHAPGTSAIDPSRPLLEIDRVTLQYKTSDSLVTATQSVSFNVHPGDRYILLGPSGCGK 60 MSDHA G S+IDPSRPLLEIDRVTLQYKT+DSLVTATQSVSFNVHPGDRYILLGPSGCGK Sbjct: 1 MSDHAQGASSIDPSRPLLEIDRVTLQYKTTDSLVTATQSVSFNVHPGDRYILLGPSGCGK 60 Query: 61 STLLKAIGGYLQPTSGAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASG 120 STLLKAIGGYLQPTSGAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASG Sbjct: 61 STLLKAIGGYLQPTSGAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASG 120 Query: 121 RLHGRAAAERAEYYIGKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAA 180 RL GRAAAERAEYYI KVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAA Sbjct: 121 RLQGRAAAERAEYYISKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAA 180 Query: 181 LDALTRRKMQDELLRLWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAELNSIDP 240 LDALTRRKMQDELLRLWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAELNSIDP Sbjct: 181 LDALTRRKMQDELLRLWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAELNSIDP 240 Query: 241 SQLGTAAQAELETRINDMLFAHH 263 SQLGTAAQAELETRINDMLFAHH Sbjct: 241 SQLGTAAQAELETRINDMLFAHH 263 >gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 290 Score = 334 bits (857), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 162/254 (63%), Positives = 204/254 (80%), Gaps = 2/254 (0%) Query: 9 SAIDPSRPLLEIDRVTLQYKTSDSLVTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIG 68 +A D PLL++DRV+LQY+++ ++V AT VSF+V+P DR++LLGPSGCGKS+LLK++ Sbjct: 12 AAQDLPAPLLQVDRVSLQYRSATAVVQATHEVSFDVYPADRFVLLGPSGCGKSSLLKSVA 71 Query: 69 GYLQPTSGAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLHGRAAA 128 G+L P +G IRL G+ +H+PGPDR++VFQEFDQL PWKTV QNV F L AS L R AA Sbjct: 72 GFLPPAAGEIRLDGQVLHQPGPDRIVVFQEFDQLPPWKTVLQNVMFPLLASRTLGKRDAA 131 Query: 129 ERAEYYIGKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRK 188 ERA +Y+ KVGLA+F D+YPH LSGGMK RV+IAR +AM+P +LLMDEPFAALDALTRRK Sbjct: 132 ERARHYLDKVGLARFADAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRK 191 Query: 189 MQDELLRLWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAELNS--IDPSQLGTA 246 MQ+ELL LWD+ +FT+LFVTHSIEEA+ VG RILLL+PHPG+VRAE+NS D S LG Sbjct: 192 MQEELLALWDEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINSHQYDLSSLGGV 251 Query: 247 AQAELETRINDMLF 260 + RI+ +LF Sbjct: 252 GFQQTAQRIHRLLF 265 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 213 bits (542), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 109/220 (49%), Positives = 144/220 (65%), Gaps = 2/220 (0%) Query: 16 PLLEIDRVTLQYKTSDSLVTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPTS 75 P + I V +KT D V A + ++ ++ G LLGPSGCGKSTLL AI G+ P+S Sbjct: 8 PRIRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSS 67 Query: 76 GAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLHGRAAAERAEYYI 135 G I + V EPGPDR MVFQE+ L PW TV QNV F L G +R + Sbjct: 68 GQILTDDKVVSEPGPDRGMVFQEY-ALFPWMTVEQNVAFGLEIKGTPKAEIH-QRVTQLL 125 Query: 136 GKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELLR 195 K+GL F +P LSGGM+QRV+IAR +A++ ++LMDEPF ALDALTRR +QDELLR Sbjct: 126 DKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLR 185 Query: 196 LWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAEL 235 +WD+ + T++FVTHSIEEAI + RI+++T PG V+ ++ Sbjct: 186 IWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDM 225 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 182 bits (463), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 95/222 (42%), Positives = 142/222 (63%), Gaps = 3/222 (1%) Query: 17 LLEIDRVTLQYKTSDSL-VTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPTS 75 +L+++ ++ + D V A VS ++ G + LG SGCGKSTLL A+ G+L + Sbjct: 1 MLKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSE 60 Query: 76 GAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLHGRAAAERAEYYI 135 G I L G+ V PG +R +VFQ+ D LLPWK+V+ NV L +G + + ERA+ + Sbjct: 61 GRISLDGQPVSGPGAERGVVFQK-DSLLPWKSVQDNVALGLKFAG-VSKSDSRERAQELL 118 Query: 136 GKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELLR 195 VGL F + P+ LSGGM+QRV +AR +A P +LLMDEPF ALD++TR +MQ+ L+ Sbjct: 119 RLVGLQDFARAAPYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVS 178 Query: 196 LWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAELNS 237 +W T V F+THSIEEA+ +GT +++++P PG++ A + Sbjct: 179 VWARTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFET 220 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 179 bits (453), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 100/226 (44%), Positives = 134/226 (59%), Gaps = 9/226 (3%) Query: 18 LEIDRVTLQYKTSDSLVTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPTSGA 77 + + RV L ++D + + ++ G+ LLGPSGCGKSTLL AI G+ Q SG Sbjct: 7 VSLKRVGLTIGSNDIMA----GIDLDIRAGEFVCLLGPSGCGKSTLLNAIAGF-QDVSGE 61 Query: 78 IRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLHGRAAAERAEYYIGK 137 I + G+ V PG DR +VFQ + L PW +VR+NVE+ L G + AE Y+ Sbjct: 62 ISVDGKRVKGPGLDRGVVFQSSEALFPWLSVRENVEYGLKLRG-VASAERRAAAERYVSL 120 Query: 138 VGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELLRLW 197 VGL ID +P LSGGM+QR IAR + EP V+LMDEPF ALDA TR +Q EL R+W Sbjct: 121 VGLKHAIDKFPAELSGGMRQRAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIW 180 Query: 198 DDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAELNSIDPSQL 243 T T++FVTH I EAI + R++ +T P RA + +I+ L Sbjct: 181 KSTGCTIVFVTHDIWEAILLADRVVTMTAGP---RAHIKTIEEVHL 223 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 842,789 Number of extensions: 35080 Number of successful extensions: 453 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 311 Number of HSP's successfully gapped: 132 Length of query: 263 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 180 Effective length of database: 1,226,865 Effective search space: 220835700 Effective search space used: 220835700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)