BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2558.p
         (338 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate A...   667   0.0  
gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate A...   240   1e-64

>gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 341

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/336 (96%), Positives = 331/336 (98%)

Query: 3   RRSFTSLMIASALALSGASGAARAEAQEVRISHGYGLLYLPLMVMRDQGLVEKHAKAMGL 62
           RR+FTSLMIASALALSG SG A AEAQEVRISHGYGLLYLPLMV+RDQ LVEKHAKAMGL
Sbjct: 6   RRTFTSLMIASALALSGVSGTAHAEAQEVRISHGYGLLYLPLMVIRDQNLVEKHAKAMGL 65

Query: 63  GDVKTKWVLLDGGNVINDAMLAGNLDIAGTGAPGFVTLWSKAHGIPRSEVVGLGALSTSP 122
           G+VKTKWVLLDGGNVINDAMLAGNLDIAGTGAPGFVTLWSKAHGIPRSEVVGLGALSTSP
Sbjct: 66  GEVKTKWVLLDGGNVINDAMLAGNLDIAGTGAPGFVTLWSKAHGIPRSEVVGLGALSTSP 125

Query: 123 LWLNTNNPNVKSLKDFTPKDKIAIPGIKTSLSAVLLQMAAAKTFGIENYAKLDPLTVSLS 182
           LWLNTNNPNVKSLKDFTPKDKIAIPGIKTSLSAVLLQMAAAKTFGIENYAKLDPLTVSLS
Sbjct: 126 LWLNTNNPNVKSLKDFTPKDKIAIPGIKTSLSAVLLQMAAAKTFGIENYAKLDPLTVSLS 185

Query: 183 HPEAMASLVSGKTEITAHFTSPPFSYQEAKAPGITRVLNSTDVLGHITIDVVFALKSFTD 242
           HPEAMASLVSGKTEITAHFTSPPFSYQEAKAPGITRVLNSTDVLGHITIDVVFALKSFTD
Sbjct: 186 HPEAMASLVSGKTEITAHFTSPPFSYQEAKAPGITRVLNSTDVLGHITIDVVFALKSFTD 245

Query: 243 KNPKLTQAVMAAQEEANAYIAKNRKGAAEIFLRVSKLKLPQEEVEQMLADPGTEFSTTPV 302
           KNPKLTQA MAAQEEANAYIAKNRKGAAEIFLRVSKLKLPQEEVEQMLADPGTEF++TPV
Sbjct: 246 KNPKLTQAFMAAQEEANAYIAKNRKGAAEIFLRVSKLKLPQEEVEQMLADPGTEFTSTPV 305

Query: 303 DIMQYVVFMSKAGTIKTKPAVWNEMFVPAFKERKGS 338
           DIMQYVVFMSKAGTIKTKPAVW+EMFVPAFKERKGS
Sbjct: 306 DIMQYVVFMSKAGTIKTKPAVWHEMFVPAFKERKGS 341


>gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 342

 Score =  240 bits (612), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 128/312 (41%), Positives = 196/312 (62%), Gaps = 6/312 (1%)

Query: 19  GASGAARAEAQEVRISHGYGLLYLPLMVMRDQGLVEKHAKAMGLGDVKTKWVLLDGGNVI 78
           GA   ARAE Q +RI+  +G++YL L V +DQ L+EKH KA G+ D+K +W+ L GG+ I
Sbjct: 25  GAPLMARAEGQ-LRIAEQFGIVYLLLNVAQDQQLIEKHGKAAGV-DIKVEWLKLSGGSAI 82

Query: 79  NDAMLAGNLDIAGTGAPGFVTLWSKAHGIPRSEVVGLGALSTSPLWLNTNNPNVKSLKDF 138
           NDA+L+G++DIAG G    +T+W + +G  R  V G  +L   P +L +NNP VK++ DF
Sbjct: 83  NDALLSGSVDIAGAGVGPLLTIWDRTYG--RQNVRGAASLGNFPYYLVSNNPKVKTIADF 140

Query: 139 TPKDKIAIPGIKTSLSAVLLQMAAAKTFGIENYAKLDPLTVSLSHPEAMASLVSGKTEIT 198
           + KD+IA+P +  S+ + +LQ+A+AK +G   Y +LD +++++ HP+A A+++SG TEIT
Sbjct: 141 SDKDRIALPAVGVSVQSRVLQLASAKLWGDAQYNRLDKISIAVPHPDATAAIISGGTEIT 200

Query: 199 AHFTSPPFSYQE-AKAPGITRVLNSTDVLGH-ITIDVVFALKSFTDKNPKLTQAVMAAQE 256
            HF +PPF  QE A  P    VL S DVLG   +  V++A + F   NPK  +A + A E
Sbjct: 201 GHFGNPPFQEQELAGNPNAHIVLKSYDVLGGPSSATVLYATEKFRKDNPKTYRAFLDALE 260

Query: 257 EANAYIAKNRKGAAEIFLRVSKLKLPQEEVEQMLADPGTEFSTTPVDIMQYVVFMSKAGT 316
           E  ++I  N   AA+I+L+V+K    ++ + Q++ +P  +F   P +      FM + G 
Sbjct: 261 ETASFIRANPDKAADIYLKVNKGNTDRKLLLQIIKNPEVQFKIAPQNTYGLAEFMHRVGA 320

Query: 317 IKTKPAVWNEMF 328
           IK KPA   + F
Sbjct: 321 IKNKPASVKDYF 332


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 969,397
Number of extensions: 38788
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 2
Length of query: 338
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,212,660
Effective search space: 305590320
Effective search space used: 305590320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)