BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2554.p
         (622 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311837|ref|YP_003775929.1| O-linked N-acetylglucosamine tr...  1019   0.0  

>gi|300311837|ref|YP_003775929.1| O-linked N-acetylglucosamine
           transferase [Herbaspirillum seropedicae SmR1]
          Length = 623

 Score = 1019 bits (2636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/623 (81%), Positives = 548/623 (87%), Gaps = 1/623 (0%)

Query: 1   MTASQDDIFSLEKFEYLCYGRQQEAAARELVRLLMLIDRHYGQLAGNFSLQVSPAVTQAE 60
           MTAS    FSL+ FEYLCY RQ EAAARELVRLL LIDRHYGQL G F L VSPAV  A 
Sbjct: 1   MTASPAPAFSLDNFEYLCYARQHEAAARELVRLLALIDRHYGQLTGQFPLSVSPAVPAAA 60

Query: 61  LEQHMLTRITSAISALLSDPSFHISPNGFGQLINFQRWLAALFGASHFINADHILRSLKL 120
           LEQH+L+RITSAISAL SDPSFHISP+GFGQLI+FQRWLAALF AS FI+ADHILR+L  
Sbjct: 61  LEQHILSRITSAISALFSDPSFHISPDGFGQLIHFQRWLAALFAASPFIHADHILRALNP 120

Query: 121 GGPQAEVFEVKPLDLVKFCLLYSPESELPLDVEALWAQNKPLAAALFLALMSPRFLGTPA 180
           GGPQA+  EVKPLDLVKFCLLYSPESELPLDVE LWAQN PLAAALFLALMSPRFLGTPA
Sbjct: 121 GGPQAKTVEVKPLDLVKFCLLYSPESELPLDVEMLWAQNPPLAAALFLALMSPRFLGTPA 180

Query: 181 AHSKREALLNWLPDRLQELDSLEGLPVGVLHDVYMHCSYADLPQRHRIKGAINQLILKKL 240
           AHSKREALL WLPDRLQ+LDSL GLPV VLHDVYMHCSYADLPQRHRIKGAINQL+ K L
Sbjct: 181 AHSKREALLGWLPDRLQQLDSLAGLPVAVLHDVYMHCSYADLPQRHRIKGAINQLLQKTL 240

Query: 241 QADGLGDLQHEGSGRVAGKPVMLVLLEWFSGGHSIYRTHSKTLEAARRHFHVVAMGYAAN 300
           +++GL DL  +G+ RV GKP+MLVL+EWFSGGHSIYRTHSKT+EAARRHFH+V +G+ AN
Sbjct: 241 RSEGLDDLDQDGAARVDGKPIMLVLVEWFSGGHSIYRTHSKTMEAARRHFHLVGLGFEAN 300

Query: 301 TDELGRAVFDEFITLDHPADLPGCLRTLRQTALTRQPRVFYMPSVGMFPITMFAANLRVA 360
           TD LGRAVFDEFI L  P+DL G +R LR+ A  RQPRVFYMPSVGMFPITMFAANLR+A
Sbjct: 301 TDALGRAVFDEFIDLGKPSDLIGSIRRLREIAGQRQPRVFYMPSVGMFPITMFAANLRLA 360

Query: 361 PLQVAALGHPATTCSPRIDYISVEEDFVGDAACFTEALLRLPADGQPYRPTAIPFAVPRL 420
           PLQVA LGHPATT SP IDYISVEEDFVGD ACF+E LLRLPADGQPYRP+AIPF +P  
Sbjct: 361 PLQVAGLGHPATTHSPHIDYISVEEDFVGDPACFSEQLLRLPADGQPYRPSAIPFEIPIR 420

Query: 421 ERRDQAVVNVAIAATTMKLNPRFLAACQKIVELAAQAPQGV-ARQVQLHFLVGQAQGLLY 479
           ER D+  V VAIAATTMKLNPRFL ACQ+IV LAA  P G   RQ++LHFLVGQAQGLLY
Sbjct: 421 ERSDRPEVQVAIAATTMKLNPRFLMACQQIVALAANPPAGQPGRQLRLHFLVGQAQGLLY 480

Query: 480 PQLQRLILRYVPSAQVYAHQPYQQYLSLFNQCDMFLSPLPFGNTNGIIDAFTVGLPGVCK 539
           PQL+RLILRYVPSAQVYAHQPYQQYLS+FNQCDMFLSPLPFGNTNGIIDAFTVGLPGVCK
Sbjct: 481 PQLRRLILRYVPSAQVYAHQPYQQYLSIFNQCDMFLSPLPFGNTNGIIDAFTVGLPGVCK 540

Query: 540 TGPEVFEHIDEGLFRRVGLPDWTIAATLDDYILAAVRMATDYPTRSALYAQLAQPQAMQR 599
           TGPEVFEHIDEGLFRRVGLPDWTIAATLDDYI AAVRMATDYP RSALYA LA P+A+QR
Sbjct: 541 TGPEVFEHIDEGLFRRVGLPDWTIAATLDDYIQAAVRMATDYPARSALYAHLADPRALQR 600

Query: 600 LFEGRPEALGDALAALCAAEPAQ 622
           LFEGRPE+LGDAL ALC  +  Q
Sbjct: 601 LFEGRPESLGDALMALCRQDAPQ 623


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,000,790
Number of extensions: 90024
Number of successful extensions: 298
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 531
Effective length of database: 1,188,985
Effective search space: 631351035
Effective search space used: 631351035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 133 (55.8 bits)