BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2553.p
         (344 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311836|ref|YP_003775928.1| transmembrane protein [Herbaspi...   437   e-124

>gi|300311836|ref|YP_003775928.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 365

 Score =  437 bits (1124), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/346 (64%), Positives = 259/346 (74%), Gaps = 17/346 (4%)

Query: 6   ALLLTALLSLPLLP-----------------AQVAAQARQPLSLGGATPYTMAVYANADL 48
           A++L+ L SLP+LP                 +  AA   QPL+L G TPYT+ +YANADL
Sbjct: 10  AMILSRLRSLPVLPLVTLFMALTMLTAITARSADAAPVAQPLTLPGPTPYTLTLYANADL 69

Query: 49  NQLPSHVQRAVVIVHGVKRNAMNYFAIGQHLLQMAQLTASDTLLLAPNFMTRKDAGLLPD 108
           +  P+ +QRAVVIVHG+KRNA +YFAIGQ LL  AQL+ + TLLLAP FMT +D+G    
Sbjct: 70  SHPPAALQRAVVIVHGIKRNADDYFAIGQRLLTAAQLSPATTLLLAPRFMTARDSGASAQ 129

Query: 109 MPIWGGAAWMQGKASTRGVTGITSFQALDDLLRWLADPGRFPDLREIVLIGHSAGAQLMQ 168
           M +W G AWMQG AS  GVTGITSFQALDDLLRWLAD GRFP LREIVLIGHSAGAQLMQ
Sbjct: 130 MALWAGDAWMQGAASKDGVTGITSFQALDDLLRWLADAGRFPALREIVLIGHSAGAQLMQ 189

Query: 169 RYALLNDLTETLQQGGIHLRYIISSPSSYLYLSPERPTDGDFAVPPGTSCPRYDDYRYGL 228
           RYA+LN L E LQQ  IHLRY++SSPSSYLY SPERP    FA+P   +CP YDDYRYGL
Sbjct: 190 RYAMLNSLDEALQQRNIHLRYVVSSPSSYLYASPERPDGNGFALPKTAACPDYDDYRYGL 249

Query: 229 GQPPAYLAQQHLDGHQLFARYAARDVRYLVGGRDVDPQHRFLDRSCGAALQGATRLARQL 288
            Q P YLA+Q LDG +LFARYA RDVRY+VG  D DPQ RFLDRSC AALQGA+R+ARQL
Sbjct: 250 QQAPPYLARQELDGPRLFARYAGRDVRYMVGQHDTDPQQRFLDRSCAAALQGASRVARQL 309

Query: 289 AYVSYEQFLARQWQSPVKHPQQVIPDATHDPARLYRSPLVLGLIFP 334
           AYV+YEQFLA++WQ PV+H Q++IP A H   RL+  P  +G IFP
Sbjct: 310 AYVAYEQFLAQRWQRPVRHEQRLIPGAAHGAERLFGRPEAVGWIFP 355


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,100,143
Number of extensions: 47077
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 258
Effective length of database: 1,212,660
Effective search space: 312866280
Effective search space used: 312866280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)