BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2552.p (334 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon... 612 e-176 gi|300312820|ref|YP_003776912.1| AraC family transcription regul... 149 4e-37 gi|300313240|ref|YP_003777332.1| AraC family transcription regul... 115 6e-27 gi|300310610|ref|YP_003774702.1| AraC family transcription regul... 114 2e-26 gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon... 99 5e-22 >gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 332 Score = 612 bits (1579), Expect = e-176, Method: Compositional matrix adjust. Identities = 297/334 (88%), Positives = 314/334 (94%), Gaps = 2/334 (0%) Query: 1 MSFLSLSQADTAATPTQRALRTAIARDVDEHAHNLTNWEQRYDQITCGRFEGVLQEWQSS 60 MS LSQ DT ATP QRALRT +ARDVDEHAHNLT+WEQRYDQITCG FEGVLQEWQS Sbjct: 1 MSSCLLSQPDTPATPIQRALRTTVARDVDEHAHNLTDWEQRYDQITCGSFEGVLQEWQSD 60 Query: 61 GLQIFREASSRAVRQSCQVWPDAYWFGIEVRTSGMRINGRPVAEDMVMTRPGACEFELVT 120 GLQIFREASSRAVRQSCQVWPDAYWFGIE RT+GMRINGR V ED+VMTRPGACEFELVT Sbjct: 61 GLQIFREASSRAVRQSCQVWPDAYWFGIEARTTGMRINGRQVGEDVVMTRPGACEFELVT 120 Query: 121 PDAHEIFGIVVQRDALQASAARLGCQPDWGRLGQAELLKVEHGGLQDCRQHISALLALAD 180 PDAHEI+GIVVQRDALQASAARLGCQPDW RLGQAELLKV+HGGL+DCRQ I+ALLA+A Sbjct: 121 PDAHEIYGIVVQRDALQASAARLGCQPDWQRLGQAELLKVDHGGLEDCRQQIAALLAMAG 180 Query: 181 QASGAHAHAALQLRQEAVLVSLLALLDDSEIEAEAGSSFLRRRRIVNDAREFALAHQESP 240 QASG AHAALQLRQEAVLV+LLA+LD+ EIEAEAG+SFLRRRRIVNDAREFA+AHQ+SP Sbjct: 181 QASG--AHAALQLRQEAVLVALLAMLDEGEIEAEAGASFLRRRRIVNDAREFAMAHQDSP 238 Query: 241 VTVPMLCEAVHVSRRTLQYCFEDVLGMSPISYLRSLRLNGVRRALCQGDGSQAMGSIGDI 300 VTVPMLCEAVHVSRRTLQYCFEDVLGMSP+SYLRSLRLNGVRRALC GDG QA+GSIGDI Sbjct: 239 VTVPMLCEAVHVSRRTLQYCFEDVLGMSPMSYLRSLRLNGVRRALCHGDGRQAVGSIGDI 298 Query: 301 AAAWGFANFSQFSCDYKKLFGQTPSAMLQARTRH 334 AAAWGFANFSQFSCDYKKLFGQTPSAMLQARTRH Sbjct: 299 AAAWGFANFSQFSCDYKKLFGQTPSAMLQARTRH 332 >gi|300312820|ref|YP_003776912.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 149 bits (375), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 106/313 (33%), Positives = 155/313 (49%), Gaps = 20/313 (6%) Query: 27 DVDEHAHNLTNWEQRYDQITCGRFEGVLQEWQSSGLQIFREASSRAVRQSCQVWPDAYWF 86 DVDE A LT WEQ Y Q+ GRF+G L Q+ RE ++ A+ + P Sbjct: 15 DVDEQASMLTGWEQEYQQLGSGRFDGALGMVQTEDFCFIRERTNTALHERMVPPPGQMVI 74 Query: 87 GI-EVRTSGMRINGRPVAEDMVMTRPGACEFELVTPDAHEIFGIVVQRDALQASAARLGC 145 GI G +NGRP+ +D ++ G+ + T E+ GI +QRD ++L Sbjct: 75 GICNSSERGHLLNGRPLGQDQLIVLDGSRAHHIRTTGPIELMGISMQRDLF---LSQLHE 131 Query: 146 QPD-----WGRLGQAELLKVEHGGLQDCRQHISALLALADQASGAHAHAALQLRQEAVLV 200 Q D W L +L G L R + S L + A G H + ++ Sbjct: 132 QDDASVRKWLDLSVLQLDPATAGML---RHYFSLAFDLLNTAQGKTVHPISPRALASTVI 188 Query: 201 SLLAL---LDDSEIEAEAG-SSFLRRRRIVNDAREFALAHQESPVTVPMLCEAVHVSRRT 256 S +AL L+ + E+ S RR RIV +A ++ AH + + +C A HVSRRT Sbjct: 189 SNVALALSLNHGSNDLESTLPSRQRRERIVQNAIDYMRAHAGEEIGILDVCRATHVSRRT 248 Query: 257 LQYCFEDVLGMSPISYLRSLRLNGVRRALCQGDGS----QAMGSIGDIAAAWGFANFSQF 312 LQYCFE+ L +SP+ YL++LRLN R + + G +IG++AA GF + S+F Sbjct: 249 LQYCFEERLDISPLQYLKALRLNAAHREIKRRTGEDRAHDRHATIGNLAALCGFNHPSRF 308 Query: 313 SCDYKKLFGQTPS 325 + +YKK+FG PS Sbjct: 309 ASEYKKMFGVLPS 321 >gi|300313240|ref|YP_003777332.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 115 bits (287), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 90/316 (28%), Positives = 145/316 (45%), Gaps = 24/316 (7%) Query: 26 RDVDEHAHNLTNWEQRYDQITCGRFEGVLQEWQSSGLQIFREASSRAVRQSCQVWPDAYW 85 +DV HA + W+Q Y QI+ G+ E L + + FRE ++ V Q + D Sbjct: 9 QDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHGEAPRDQIC 68 Query: 86 FGIEVRTSGM-RINGRPVAEDMVMTRPGACEFELVTPDAHEIFGIVVQRDALQASAARLG 144 F + G + GR + ++ G EF P ++ + RD + ++ Sbjct: 69 FAFPIAAPGAAHVQGREADDKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLFEEHLHQM- 127 Query: 145 CQPDWGRLG---QAELLKVEHGGLQDCRQHI-----SALLALADQASGAHAHAALQLRQE 196 PD R+ + ++KV GL+ CR+ + A+L D A + L++E Sbjct: 128 --PDPDRIAALLKQPVIKVPPKGLRACRERLLTLFSHAMLQFDDGPRQADMPSVQTLQRE 185 Query: 197 AVLVSLLALL-------DDSEIEAEAGSSFLRRRRIVNDAREFALAHQESPVTVPMLCEA 249 L S L D + + ++ R IV + + ++ +C+ Sbjct: 186 QALESSLLGELLGLLCAPDCDPVRQMSTT---RSYIVEKLHRQTIVDAANVPSIFEVCQR 242 Query: 250 VHVSRRTLQYCFEDVLGMSPISYLRSLRLNGVRRALCQGDGSQAMGSIGDIAAAWGFANF 309 + VSRRT+Q F+ V +P++YLR +RLNGVRR L +A SIGDIA+ WGF + Sbjct: 243 LQVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEA--SIGDIASRWGFFHL 300 Query: 310 SQFSCDYKKLFGQTPS 325 S F+ DY+ LFG+ PS Sbjct: 301 SHFAEDYQALFGELPS 316 >gi|300310610|ref|YP_003774702.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 99/320 (30%), Positives = 148/320 (46%), Gaps = 31/320 (9%) Query: 26 RDVDEHAHNLTNWEQRYDQITCGRFEGVLQEWQSSGLQIFREASSRAVRQSCQVWPDAYW 85 +DV EHA ++ W Y QI+ G+ E L + + +FRE ++ V Q + + Sbjct: 9 QDVHEHAAAISPWNLHYAQISAGKVESSLLQLSTPRCHVFRERINQRVVQQGEAPREQVC 68 Query: 86 FGIEVRTSGM-RINGRPVAEDMVMTRPGACEFELVTPDAHEIFGIVVQRDALQASAARLG 144 F V G + GR V E ++ G EF P ++F I R +A Sbjct: 69 FAFPVAAPGKAHVQGREVDEHCMLFLQGGDEFMCHLPIDTDLFAITFDRALFEAQLEHTA 128 Query: 145 CQPDWGRLGQAELLKVEHGGLQDCRQHIS-----ALLALADQASGAHAHAALQLRQEAVL 199 L + ++KV L CR+ + A+L++ D G H Q + ++L Sbjct: 129 SPERIVALMKQPVVKVASQDLHACRERLLNIFYWAMLSIED-GHGQHPQHE-QELELSLL 186 Query: 200 VSLLALLDDSEIEAEAGSSFLR-------RRRIVNDAREFALAHQESPVTVPML---CEA 249 LLALL + A S +R R+ +NDA + VP + CE Sbjct: 187 AELLALLSAPDCGASRQISTIRSYIVDKLHRQTMNDA-----------INVPSIFEVCEQ 235 Query: 250 VHVSRRTLQYCFEDVLGMSPISYLRSLRLNGVRRALCQGDGSQAMGSIGDIAAAWGFANF 309 + VSRRT+Q F+ V +P +YLR +RLNGVRRAL Q +IGDIA+ WGF + Sbjct: 236 MQVSRRTVQNSFQTVTETTPRNYLRCVRLNGVRRALMSTSAEQI--TIGDIASRWGFFHL 293 Query: 310 SQFSCDYKKLFGQTPSAMLQ 329 S F+ DY+ LF + PS ++ Sbjct: 294 SHFAEDYRALFCELPSQTIR 313 >gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 358 Score = 99.0 bits (245), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 94/319 (29%), Positives = 145/319 (45%), Gaps = 26/319 (8%) Query: 28 VDEHAHNLTNWEQRYDQITCGRFEGVLQEWQSSGLQIFREASSRAVRQSCQVWPDAYWFG 87 +DE +L + Q++ G+ L Q +QI+RE S + + + WP + F Sbjct: 28 LDEARLSLKAGQLDLLQMSPGKLNYSLSMSQLGHIQIYRERSDKPLLKRGVNWPGSLVFS 87 Query: 88 IEVRTSGMR-INGRPVAEDMVMTRPGACEFELVTPDAHEIFGIVVQRDALQASAARLGCQ 146 V+ G ++GR V + G E++TP ++ IVV R L + R+G Sbjct: 88 FVVQARGRGWLSGRAVDPQASLVADGEALPEIITPAELDLVFIVVDRQWL---SERIGDG 144 Query: 147 PDWGRLGQAELLKV-----EHGGLQDCRQHISALLALA--DQASGAHAHAALQLRQEA-- 197 G A L+ EH + R+ L A Q S + H AL R A Sbjct: 145 ASRQIAGSARDLRCFAAWHEHALV--LRRLFPLLPGQARLGQPSPSIGHCALAPRSSAGG 202 Query: 198 -------VLVSLLALLDD-SEIEAEAGSSFLRRRRIVNDAREFALAHQESPVTVPMLCEA 249 VL +LL +L +EA + +R+++ AR T+ + Sbjct: 203 GSLAEDMVLEALLDVLGSVHRVEALRETD---HKRLIDQARRLMRGDAPERATMTQVAAH 259 Query: 250 VHVSRRTLQYCFEDVLGMSPISYLRSLRLNGVRRALCQGDGSQAMGSIGDIAAAWGFANF 309 + VSRR LQ CF +G+ I ++R+ RLN VR+AL + + SIGDIAA WGF + Sbjct: 260 LGVSRRHLQTCFNTSVGIPAIEFVRAERLNQVRKALVEARRAGLEVSIGDIAADWGFWHL 319 Query: 310 SQFSCDYKKLFGQTPSAML 328 S+F+ DY+ +FG+ PS L Sbjct: 320 SRFAADYRDMFGELPSKTL 338 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.133 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 917,793 Number of extensions: 34107 Number of successful extensions: 136 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 135 Number of HSP's successfully gapped: 6 Length of query: 334 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 248 Effective length of database: 1,212,660 Effective search space: 300739680 Effective search space used: 300739680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)