BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2551.p
         (457 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311834|ref|YP_003775926.1| amino acid transporter permease...   855   0.0  

>gi|300311834|ref|YP_003775926.1| amino acid transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 460

 Score =  855 bits (2208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/451 (96%), Positives = 442/451 (98%)

Query: 1   MNARSSGQDHTLKPVLSTLQLWAIAVGLVISGEYFGWSYGWASAGTLGFTVTALFIAAMY 60
           MNA SSGQ HTLKPVLSTLQLWAIAVGLVISGEYFGWSYGWASAGTLGFTVTALFIAAMY
Sbjct: 1   MNASSSGQGHTLKPVLSTLQLWAIAVGLVISGEYFGWSYGWASAGTLGFTVTALFIAAMY 60

Query: 61  ATFIFSFTELTTSIPHAGGPFAYSKRAFGPVGGYLAGAATLIEFVFAPPAIALAIGAYLN 120
           ATFIFSFTELTTSIPHAGGPFAYSKRAFGPVGGYLAGAATLIEFVFAPPAIALAIGAYLN
Sbjct: 61  ATFIFSFTELTTSIPHAGGPFAYSKRAFGPVGGYLAGAATLIEFVFAPPAIALAIGAYLN 120

Query: 121 VQFPQLDPKLAALGAYLLFMTLNIVGVQIAATFELFVTLLAIFELLVFMGVVAPGFSVAN 180
           VQFP +DPKLAALGAYL+FMTLNIVGVQIAATFELFVTLLAIFELLVFMGVVAPGFS+AN
Sbjct: 121 VQFPNIDPKLAALGAYLVFMTLNIVGVQIAATFELFVTLLAIFELLVFMGVVAPGFSLAN 180

Query: 181 FTKGGWSGSDGFSLAAVPGMFAAIPFAIWFFLAIEGVAMAAEEAKDPKRSIPIAYITGIL 240
           FTKGGWSGSDGFSLAAVPGMFAAIPFAIWFFLAIEGVAMAAEEAKDP+RSIPIAYITGIL
Sbjct: 181 FTKGGWSGSDGFSLAAVPGMFAAIPFAIWFFLAIEGVAMAAEEAKDPRRSIPIAYITGIL 240

Query: 241 TLVVLAIGVMLFAGGAGDWTKLANINDPLPQAMKLIVGNNSNWLHMLVWLGLFGLVASFH 300
           TLVVLAIGVMLFAGGAGDWTKLANINDPLPQAMKLIVG+NSNWLHMLVWLGLFGLVASFH
Sbjct: 241 TLVVLAIGVMLFAGGAGDWTKLANINDPLPQAMKLIVGDNSNWLHMLVWLGLFGLVASFH 300

Query: 301 GIILGYSRQIFALAREGYLPKYFARVHPRFKTPHRAILAGGVVGIAAIYSDEWITLGGQT 360
           GIILGYSRQIFALAREGYLP YFARVHPRFKTPHRAILAGGVVGIAAIYSDE I +GGQT
Sbjct: 301 GIILGYSRQIFALAREGYLPAYFARVHPRFKTPHRAILAGGVVGIAAIYSDELIKIGGQT 360

Query: 361 LTANIVTMSVFGAILMYILSMLALFRLRRAEAGLERPFRAPLYPYFPAFALFGALVCMAT 420
           LTANIVTMSVFGAILMYILSML+LFRLRRAEAGLERPFRAPLYPYFPAFALFGALVCMAT
Sbjct: 361 LTANIVTMSVFGAILMYILSMLSLFRLRRAEAGLERPFRAPLYPYFPAFALFGALVCMAT 420

Query: 421 MIYYNPLIFGIFVALLALGYVCYLALARQRS 451
           MIYYNPLIFGIFVALLALGY  +LA ARQR+
Sbjct: 421 MIYYNPLIFGIFVALLALGYAWFLATARQRA 451


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.143    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,477,747
Number of extensions: 64017
Number of successful extensions: 254
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 3
Length of query: 457
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 369
Effective length of database: 1,203,190
Effective search space: 443977110
Effective search space used: 443977110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)