BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2549.p
         (289 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311831|ref|YP_003775923.1| ethanolamine ammonia-lyase smal...   514   e-147

>gi|300311831|ref|YP_003775923.1| ethanolamine ammonia-lyase small
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score =  514 bits (1323), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/288 (87%), Positives = 269/288 (93%)

Query: 1   MSMGDQDIAPQGAENVSPGAETVIANPWEALRRFTAARIALGRSGVSLPTAPQLAFQLAH 60
           M+M D++I+PQ AEN SPGAETV ANPWEALRRFTAARIALGRSGVSLPT PQLAFQLAH
Sbjct: 1   MTMDDKNISPQCAENASPGAETVTANPWEALRRFTAARIALGRSGVSLPTQPQLAFQLAH 60

Query: 61  AQARDAVHLPLEVEALKNQLQQHGICRAEDVLHVQSAAADRLVYLQRPDLGRRLSDASRQ 120
           AQARDAVHLPL+V ALK QLQ+ G+C A++VL VQSAAADRLVYLQRPD GR+LS+ SRQ
Sbjct: 61  AQARDAVHLPLDVAALKAQLQEQGVCAAQEVLDVQSAAADRLVYLQRPDFGRKLSEPSRQ 120

Query: 121 QLLERFGTVGERRYDVGFVIADGLSALAIVRNAAPFLAEVMHRIAPQGWSLAPPVIVQQG 180
           QLLE FGT  +RRYDVG VIADGLSALAIVRNAAPFLAE+M RIAP+GWS+APPVIVQQG
Sbjct: 121 QLLELFGTQPQRRYDVGLVIADGLSALAIVRNAAPFLAELMKRIAPEGWSMAPPVIVQQG 180

Query: 181 RVAVADEIGELLGVKLVVILIGERPGLSSPDSMGLYLTWMPARGLTDASRNCISNVRPEG 240
           RVAVADEIGELLGVKLVVILIGERPGLSSPDSMGLYLTWMPARGLTDASRNCISNVRPEG
Sbjct: 181 RVAVADEIGELLGVKLVVILIGERPGLSSPDSMGLYLTWMPARGLTDASRNCISNVRPEG 240

Query: 241 LSYPEAAYKLHYLMAQAHQRSLSGVALKDETASEGQELDVRRNFLLGD 288
           L YPEAAYKLHYLMAQAHQRSLSGVALKDETASEG+ LDVRRNFLLGD
Sbjct: 241 LPYPEAAYKLHYLMAQAHQRSLSGVALKDETASEGEALDVRRNFLLGD 288


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 896,954
Number of extensions: 35899
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,222,130
Effective search space: 250536650
Effective search space used: 250536650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)