BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2547.p
         (742 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311830|ref|YP_003775922.1| isocitrate dehydrogenase [Herba...  1512   0.0  

>gi|300311830|ref|YP_003775922.1| isocitrate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 742

 Score = 1512 bits (3915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 727/742 (97%), Positives = 739/742 (99%)

Query: 1   VTTGNPTIIYTLTDEAPYLATHSLLPIVKKFTAPAGIDVVESDISVAARILAEFPEFLTD 60
           +TTGNPTIIYTLTDEAPYLATHSLLPIVKKFTA AGIDVVESDISVAARILAEFPE+LTD
Sbjct: 1   MTTGNPTIIYTLTDEAPYLATHSLLPIVKKFTAAAGIDVVESDISVAARILAEFPEYLTD 60

Query: 61  EQKVPDNLAALGALTQDPNANIIKLPNISASILQLQAAIRELQARGYKLPDYPENPSTEE 120
           EQKVPDNLAALGALTQ P+ANIIKLPNISASILQLQAAIRELQ+RGYKLPDYPENP+TEE
Sbjct: 61  EQKVPDNLAALGALTQSPDANIIKLPNISASILQLQAAIRELQSRGYKLPDYPENPTTEE 120

Query: 121 EKALQKRYAKITGSAVNPVLREGNSDRRAPNAVKNYARKHPHSMAKWSMASRTHVAHMHG 180
           EKALQKRYAK+TGSAVNPVLREGNSDRRAPNAVKNYARKHPHSMAKWSMASRTHVAHMHG
Sbjct: 121 EKALQKRYAKVTGSAVNPVLREGNSDRRAPNAVKNYARKHPHSMAKWSMASRTHVAHMHG 180

Query: 181 GDFYAGEKSLTLDKAVDVKMDLVTKSGETIVLKPKLSLQAGEIIDSMFMSKKALCAYYEE 240
           GDFYAGEKSLTLDKAVDVKMDLVTKSGETIVLKPK+SLQAGEIIDSMFMSKKALCAYYEE
Sbjct: 181 GDFYAGEKSLTLDKAVDVKMDLVTKSGETIVLKPKISLQAGEIIDSMFMSKKALCAYYEE 240

Query: 241 QMQDAFETDLLLSVHVKATMMKVSHPIVFGHAVRTYYKDTFTKHAKLFAEIGVNPNNGMS 300
           QMQDAFETDLLLSVHVKATMMKVSHPIVFGHAVRTYYKDTFTKHAKLFAEIGVNPNNGMS
Sbjct: 241 QMQDAFETDLLLSVHVKATMMKVSHPIVFGHAVRTYYKDTFTKHAKLFAEIGVNPNNGMS 300

Query: 301 GVYEKINTLPEDKKAEVLADLKADEAKRPRLAMVDSAKGITNLHAPNDVIVDASMPAMIR 360
           GVYEKINTLP+ KKAEVLADLKADEAKRPRLAMVDSAKGITNLHAPNDVIVDASMPAMIR
Sbjct: 301 GVYEKINTLPDAKKAEVLADLKADEAKRPRLAMVDSAKGITNLHAPNDVIVDASMPAMIR 360

Query: 361 AGGKMWNAAGKTEDTKALLPESTFARIYQEMINFCKTNGAFDPTTMGTVPNVGLMAQKAE 420
           AGGKMWNAAGKTEDTKALLPESTFARIYQEMINFCKTNGAFDPTTMGTVPNVGLMAQKAE
Sbjct: 361 AGGKMWNAAGKTEDTKALLPESTFARIYQEMINFCKTNGAFDPTTMGTVPNVGLMAQKAE 420

Query: 421 EYGSHDKTFEIAQAGVARIVTLDGQVLLEQNVEEGDIWRMCQVKDAAVRDWVKLAVTRAR 480
           EYGSHDKTFEIAQAGVARIVTLDGQVLLEQNVEEGDIWRMCQVKDAAVRDWVKLAVTRAR
Sbjct: 421 EYGSHDKTFEIAQAGVARIVTLDGQVLLEQNVEEGDIWRMCQVKDAAVRDWVKLAVTRAR 480

Query: 481 LSGMPAVFWLDPYRPHEAELIKKVNTYLKDHDLTGADIQIMSQVRAMRYTLERVIRGLDT 540
           LSGMPAVFWLDPYRPHEAELIKKVNTYLKDHDLTGADIQIMSQVRAMRYTLERVIRGLDT
Sbjct: 481 LSGMPAVFWLDPYRPHEAELIKKVNTYLKDHDLTGADIQIMSQVRAMRYTLERVIRGLDT 540

Query: 541 ISVTGNILRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQLVGENH 600
           ISVTGNILRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQLVGENH
Sbjct: 541 ISVTGNILRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQLVGENH 600

Query: 601 LRWDSLGEFLALAVSIEEVGIKTGNNKAKILAKTLDAATGKLLDNNKSPSPKTGELDNRG 660
           LRWDSLGEFLALAVSIEEVGIKTGN+KAKILAKTLDAATGKLLDNNKSPSPKTGELDNRG
Sbjct: 601 LRWDSLGEFLALAVSIEEVGIKTGNSKAKILAKTLDAATGKLLDNNKSPSPKTGELDNRG 660

Query: 661 SHFYLALYWAQELAAQKDDAELAKQFAPLAKALADNEQKIVEELNSVQGKQVDIGGYYLP 720
           SHFYLALYWAQELAAQKDDAELAKQFAPLAKALA+NEQKIVEELNSVQGKQVDIGGYYLP
Sbjct: 661 SHFYLALYWAQELAAQKDDAELAKQFAPLAKALAENEQKIVEELNSVQGKQVDIGGYYLP 720

Query: 721 DREKTFAVMRPSATLNQALESV 742
           DREKTFAVMRPSATLNQALE++
Sbjct: 721 DREKTFAVMRPSATLNQALETL 742


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,186,203
Number of extensions: 88401
Number of successful extensions: 275
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 1
Length of query: 742
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 650
Effective length of database: 1,184,250
Effective search space: 769762500
Effective search space used: 769762500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)