BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2536.p
         (753 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311815|ref|YP_003775907.1| 4-alpha-glucanotransferase [Her...  1113   0.0  

>gi|300311815|ref|YP_003775907.1| 4-alpha-glucanotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 751

 Score = 1113 bits (2879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/754 (80%), Positives = 654/754 (86%), Gaps = 4/754 (0%)

Query: 1   MSSA-LRRQSVPTTAKPELASVARPENDLYRLARRAGIAVQWTDAYDQPQTVQEDALRAI 59
           MSSA L+ + VP    P+ A +A  E+DL RLARRAGIA  WTDAYDQPQ V  DALRAI
Sbjct: 1   MSSATLQVKPVPA---PKAARLAADEDDLARLARRAGIATHWTDAYDQPQVVDNDALRAI 57

Query: 60  LDALELPCSTPGDCRDSLARLAREHAVGYLPPLLTGVQHQPVVLPAHSRLHGLSCRVELD 119
           L+AL LPC+TPGDCRDSLA+L +E AVGYLPPLLTGVQHQPV LPAHS LHG SCR+EL+
Sbjct: 58  LEALGLPCATPGDCRDSLAQLDQEQAVGYLPPLLTGVQHQPVCLPAHSHLHGQSCRLELE 117

Query: 120 NGARLMLLISSDLNQPPTLPPIEVPGYHRLLVAGHILTLAIAPPRCYTLADALAGQGSER 179
           NGARLMLLISSDLN PPTLPPI VPGYHRLLVAGHILTLAIAP RCYT+ADAL  Q   R
Sbjct: 118 NGARLMLLISSDLNAPPTLPPIAVPGYHRLLVAGHILTLAIAPARCYTIADALGEQADAR 177

Query: 180 GWALAAQVYGLRSDSLKAARKVYGDGGIGHFGALAQLATMAADYGAAALAMSPLHAMFAA 239
           GWALAAQVYGLRSDSLK ARKVYGDGGIGHFGALA LA +A++YGAAALAMSP+HAMF A
Sbjct: 178 GWALAAQVYGLRSDSLKPARKVYGDGGIGHFGALAALAPLASEYGAAALAMSPVHAMFTA 237

Query: 240 DPGRSSPYSPSSRLFLNPFLIDPAGILGEDAQAQVLAEGGSEMIAAHERLQQASLIDWSR 299
           DPGRSSPYSPSSRLFLNP LIDPA ILGE AQAQVLAEGGSEMIAAHERLQ A L+DW+R
Sbjct: 238 DPGRSSPYSPSSRLFLNPLLIDPAAILGEAAQAQVLAEGGSEMIAAHERLQGAPLVDWAR 297

Query: 300 AGAHRLSLLRRLYALFRTEQASDGGQLAAFAAFQREGGAALRAHALYEAYSQHLSNQGAP 359
           AGAHRL+LLRRLYALFRTE  +D  Q AAFAAFQ +GG ALRAHALYEAYS  L  QGAP
Sbjct: 298 AGAHRLTLLRRLYALFRTEHGADPAQSAAFAAFQSQGGPALRAHALYEAYSNWLCQQGAP 357

Query: 360 GHCDWRQWGAAGQHPETPEMQDFARQHAGELDFHLFLQWQAARQLGAAQQRARQAGMRIG 419
           G+CDWRQWGAA QHP+TP M +FA  HAGE++FHLFLQWQA RQL  AQQ AR +GM IG
Sbjct: 358 GYCDWRQWGAAAQHPDTPAMSNFAADHAGEIEFHLFLQWQATRQLAHAQQCARASGMPIG 417

Query: 420 LIADLAVGADNGGSQAWSHQGEIAAGLTVGAPPDRLAPQGQNWGLGAFSPLALRRTGYRG 479
           LIADLAVGADNGGSQAWSHQGEIAAGLTVGAPPDRLAP GQNWGLGAFSPLALRRTGY+ 
Sbjct: 418 LIADLAVGADNGGSQAWSHQGEIAAGLTVGAPPDRLAPLGQNWGLGAFSPLALRRTGYQA 477

Query: 480 YLAMLRACFAQGGGVRIDHVLGLNRLWLVPQGRQADAGAYVAYPQQDMLRLIALESWRHR 539
           YLAMLRAC AQGGGVRIDHVLGLNRLWLVPQG  A AGAYVAYPQQDMLRLIALESWRHR
Sbjct: 478 YLAMLRACMAQGGGVRIDHVLGLNRLWLVPQGLGAQAGAYVAYPQQDMLRLIALESWRHR 537

Query: 540 AVVIGEDLGTVPPGFDQVLAEAGVAGIRVLWFQRDKQNFLPPAAWSRQAIAVTTTHDLPT 599
           AVVIGEDLGTVPPGFD+ LAE+GVAGIRVLWFQRDK+ FLPPA WS QAI VTTTHDLPT
Sbjct: 538 AVVIGEDLGTVPPGFDRDLAESGVAGIRVLWFQRDKEGFLPPAEWSAQAIGVTTTHDLPT 597

Query: 600 VAGWWSGADLAWRERLGHLPQGLPAALAQRSQERSQLWHGLVQQGWASGPLPHVAPALAE 659
           VAGWW+GAD+AWR RLG L +G  AA AQR++ER QLW  LV+QGWASGP+P ++ A AE
Sbjct: 598 VAGWWTGADIAWRHRLGQLEEGRAAAEAQRAKERDQLWQALVEQGWASGPVPQISAAEAE 657

Query: 660 DMADAPAPAALADCAIAVDAALQWVAATPAPLAVVPLEDILGLTQQPNLPGLTDPHPNWR 719
           D+A    P    +CAIAVDAAL++VAATPAPLAVVP+EDILGL QQPNLPGLTDPHPNWR
Sbjct: 658 DLAQQALPPVPEECAIAVDAALEFVAATPAPLAVVPVEDILGLVQQPNLPGLTDPHPNWR 717

Query: 720 RRLPADTTQLFADYAARARLERLRRVRGAAPKEN 753
           RRLP DT QLFA YAARARLERLRRVRG  PKE 
Sbjct: 718 RRLPDDTPQLFASYAARARLERLRRVRGYTPKET 751


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,438,904
Number of extensions: 109077
Number of successful extensions: 333
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 1
Length of query: 753
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 661
Effective length of database: 1,184,250
Effective search space: 782789250
Effective search space used: 782789250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)