BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2535.p
         (992 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311814|ref|YP_003775906.1| malto-oligosyl trehalose syntha...  1501   0.0  

>gi|300311814|ref|YP_003775906.1| malto-oligosyl trehalose synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 987

 Score = 1501 bits (3886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 768/978 (78%), Positives = 840/978 (85%), Gaps = 15/978 (1%)

Query: 18  RATARLQLHRDFRFEHAAEVVDYYQRLGISHLYLSPILVARPGSSHGYDVVDTTRINPEL 77
           RATARLQLHRDF F  AAEVVDYYQRLG+SHLY+SPIL ARPGS+HGYDV D +RINPEL
Sbjct: 22  RATARLQLHRDFNFAQAAEVVDYYQRLGVSHLYVSPILTARPGSTHGYDVADASRINPEL 81

Query: 78  GGEEGLRQLCQRLRAQDMGLIVDIVPNHMALGQHNAWWQDVLRWGRHSRHADWFDIQWDS 137
           GGE GLRQL QRLRA  MGL+VDIVPNHMA+G+HN WWQDVLRWGR S HA WFDI WDS
Sbjct: 82  GGESGLRQLVQRLRAAGMGLLVDIVPNHMAVGRHNPWWQDVLRWGRESPHALWFDIDWDS 141

Query: 138 PDPALAGKVLLPFLGQPYAETLEAGELVLQFDPEQGELYVAHDEHRFPLAPQDHAVVLET 197
            DPAL GKVLLPFLGQPYAE LEAGELVL  D E GELYV H EHRFPLA  DHA+VLET
Sbjct: 142 ADPALKGKVLLPFLGQPYAEALEAGELVLCLDAESGELYVEHYEHRFPLAAPDHALVLET 201

Query: 198 AGSARLADAMAAFRAIDARHPDQDRQAAAAREQLRKLTSHAEALADIDAALAAFSGSQPH 257
           AGS RLA+ +AAFR          +  +AA   LR L    EALADIDAALA FS +QPH
Sbjct: 202 AGSQRLAEVIAAFRKA------MPQTCSAAYGLLRDLARDPEALADIDAALAGFSAAQPH 255

Query: 258 GRSALHQLLERQHYRLAYWRNAADEINWRRFFEVSELIGMKVEREEVFEAMHAELFRLYA 317
           GRSALHQLLERQHYRLA WRNAADEINWRRFFEVSEL+GM+VERE+VFEAMHAELFRLYA
Sbjct: 256 GRSALHQLLERQHYRLACWRNAADEINWRRFFEVSELVGMRVEREDVFEAMHAELFRLYA 315

Query: 318 EGLIDGLRLDHIDGLTDPAGYCQRLRARLRSLRPDHEPYLIAEKILAGDEVLPPDWTLDG 377
           EGLIDGLRLDHIDGLTDPA YC RLR RLRSLRP HEPY++AEKILAGDE LP  W LDG
Sbjct: 316 EGLIDGLRLDHIDGLTDPAAYCLRLRQRLRSLRPGHEPYIVAEKILAGDEALPAAWQLDG 375

Query: 378 TTGYEFMDQCAAVLHDAEGEPVLDELWRDMVGELPATPDQ--LQGHAPGELSHFATIVQQ 435
           +TGY+FM+QCAAVLHD +GEPVLD+LWRD+V EL ++  Q  +Q H P EL HF ++VQQ
Sbjct: 376 STGYDFMEQCAAVLHDGDGEPVLDDLWRDIVAELGSSSSQDCMQVHGPAELCHFPSMVQQ 435

Query: 436 ARRSFLVRNFAAEFNALTLCLHQLARSATQTRDLTLMSIRRAVAELLVHFPVYRTYATEQ 495
           ARRSFL RNFAAEFN LT CLHQLARSA  TRDL+LMS+RR VAELLVHFPVYRTYATE+
Sbjct: 436 ARRSFLTRNFAAEFNVLTHCLHQLARSAVTTRDLSLMSVRRCVAELLVHFPVYRTYATEE 495

Query: 496 GMPAGQRELLARTAQLAATTLHAADHPTLHVVEGWLGGDLLLDRRDTQRRALQLRAIARF 555
           GMPA +RELLARTAQLAA  LH +DHPTLHVVEGWLGGDL+L      RRALQLRAIARF
Sbjct: 496 GMPALERELLARTAQLAAARLHPSDHPTLHVVEGWLGGDLMLPVGQEPRRALQLRAIARF 555

Query: 556 QQLTPPLTAKSMEDTAFYRYGRLLSRNEVGAEPAHLALSVAGFHQLAERRAQQSPYSLLA 615
           QQLTPPLTAKSMEDTAFYRYGRLLSRNEVGAEPA LALS+A FHQLA RRA Q+P SLLA
Sbjct: 556 QQLTPPLTAKSMEDTAFYRYGRLLSRNEVGAEPAQLALSIAHFHQLAARRAAQTPASLLA 615

Query: 616 TATHDHKRGEDARMRLAALSEIAEEWATVLRHWHQLNAPIVAATAGAQGGIDALDQCLLY 675
           T THDHKRGEDARMRLAALSEI EEWATV+RHW  LNAPIVAATAGA+GGIDA D+ +LY
Sbjct: 616 TGTHDHKRGEDARMRLAALSEIPEEWATVVRHWRTLNAPIVAATAGAEGGIDAADEYMLY 675

Query: 676 QTLVGAWPDGMRAGDDDLSALEQLAERVIQWQRKALREAKRRSDWVAPQADYEAACERFT 735
           Q+LVG WPDGMRAGDDDLSALE+LA RVI WQRKALREAKRRSDW+APQA YEAACERFT
Sbjct: 676 QSLVGVWPDGMRAGDDDLSALEELAARVIAWQRKALREAKRRSDWIAPQASYEAACERFT 735

Query: 736 RALLCDPGLDPRHHPFLTELEEFVRRLAPLGAINSLTQTMLKLATPGVPDFYQGSELWDL 795
           RALLCDPGLD RHHPFLT LEEFVRRLAPLGAINSL+QTMLKL  PGVPDFYQGSELWDL
Sbjct: 736 RALLCDPGLDARHHPFLTGLEEFVRRLAPLGAINSLSQTMLKLTVPGVPDFYQGSELWDL 795

Query: 796 SMVDPDNRRPVDFALRERRLADAVSRPVSLRDWQSGSAKQQLIHSVLQYRRQHEALFSAG 855
           SMVDPDNRRPVDF +R+RRLADA+SRPVSLR WQSG AKQQLIH+VLQ+RR H  L++ G
Sbjct: 796 SMVDPDNRRPVDFDMRQRRLADAMSRPVSLRQWQSGGAKQQLIHAVLQHRRAHAQLYAQG 855

Query: 856 RYIPLSTHGKLARHVIAFARVWPGEETAQAAVAQTGEGWQATLVICTRLAAHLLSFEGRR 915
           +Y+PLSTHGKLARHVIAFAR+ P  + AQ      G+GWQAT+V+CTRLAAHLL+F+G R
Sbjct: 856 QYLPLSTHGKLARHVIAFARLLPAPDGAQ------GQGWQATVVVCTRLAAHLLAFDGAR 909

Query: 916 EEALPLVSAQAWGDTCITIPQALSHA-GKQMRRWRSVFTSGQGGLEECALAQGERGGSIA 974
           +EALPLVSA+ WGDT I +P  LSHA G+ +R+WRSV TSG G LEECA+  GERGGS+ 
Sbjct: 910 DEALPLVSAEVWGDTRIVLPAQLSHAQGEGLRQWRSVLTSGAGPLEECAMPDGERGGSMT 969

Query: 975 VAEILGSLPVEMLELHLA 992
           V+EILGSLPVE+LEL L+
Sbjct: 970 VSEILGSLPVELLELRLS 987


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 3,119,247
Number of extensions: 136199
Number of successful extensions: 472
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 468
Number of HSP's successfully gapped: 1
Length of query: 992
Length of database: 1,619,870
Length adjustment: 95
Effective length of query: 897
Effective length of database: 1,170,045
Effective search space: 1049530365
Effective search space used: 1049530365
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 135 (56.6 bits)