BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2533.p
         (498 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311577|ref|YP_003775669.1| hypothetical protein Hsero_2262...   858   0.0  

>gi|300311577|ref|YP_003775669.1| hypothetical protein Hsero_2262
           [Herbaspirillum seropedicae SmR1]
          Length = 501

 Score =  858 bits (2216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/496 (81%), Positives = 444/496 (89%)

Query: 1   MTPLGYQHLIDTLRLNVTPLEHVAFMDSSVNRRVDSGARILFPTSVAIESTLIGHLEFAL 60
           MTPLGYQHLIDTL L VTPLE VAF DSSVNRRVDSG RILFP SVAI+++L+GHLEFAL
Sbjct: 1   MTPLGYQHLIDTLHLEVTPLERVAFTDSSVNRRVDSGTRILFPASVAIDTSLVGHLEFAL 60

Query: 61  RHEGVNLEVIDAAFAHEHLSATALVAHWQTKPMGEHIRRACFLWEWLTGQELEVEALTNG 120
           RHEGVNLEVIDAAFA   ++  AL+A WQ KP GEHIRRACFLWEWLTG EL+V AL NG
Sbjct: 61  RHEGVNLEVIDAAFASAEITPAALIAQWQAKPTGEHIRRACFLWEWLTGDELQVAALPNG 120

Query: 121 GYVDLFPDEVYYTSSKPILASKFRVRNNALGSPAFCPTVRRRALDRTPPLEELLREARHA 180
           GYVDLFP+++YYT+++P+ + KFR+RNNALG+PAFCP VRR  +  TPPLEELL+EARHA
Sbjct: 121 GYVDLFPEDIYYTAAQPVRSPKFRIRNNALGTPAFCPVVRRSVMSCTPPLEELLKEARHA 180

Query: 181 LEALDDPELYRRAVAYLYLSETRSSYAIESEAPSFNKQERFVQLLQRAGEPVEVNEQWLV 240
           LEAL+DPELYRRAVAYLYLSETRSSYAIESE PSFNKQERFVQLLQRAGEPVEVNEQWLV
Sbjct: 181 LEALEDPELYRRAVAYLYLSETRSSYAIESETPSFNKQERFVQLLQRAGEPVEVNEQWLV 240

Query: 241 SLQNVIVRDTYSKEASYRHQQNWLEDSSGRVSFFPTPVQDLEQVMRGWENFINDSERCTD 300
            LQN IVRD YS+EASYRHQQNWLED+SGRVSFFP P +DLE VMRGWE+F+ND+ RCTD
Sbjct: 241 GLQNAIVRDVYSQEASYRHQQNWLEDASGRVSFFPAPAEDLEYVMRGWEDFVNDTRRCTD 300

Query: 301 LLVKAACAAFGFVYLHPFLDGNGRLHRFLIQHILARSTLMAPGTLVPVSAVIEKNIPAYS 360
           LLVK ACAAFGFVYLHPFLDGNGRLHRFLIQH+LARSTLMAPGTLVPVSAVIEKNIPAYS
Sbjct: 301 LLVKTACAAFGFVYLHPFLDGNGRLHRFLIQHVLARSTLMAPGTLVPVSAVIEKNIPAYS 360

Query: 361 ELLRAFSRPVTALWDYRRGDQEPVVISHPGSRAYRFLRADREVGFLHDMIKQAVREEIPK 420
           ELL AFSRPVTALWDYRRGDQEP+VISHPGSRAYRFLRADREV FLHDM++QAVREEIP+
Sbjct: 361 ELLTAFSRPVTALWDYRRGDQEPIVISHPGSRAYRFLRADREVAFLHDMVRQAVREEIPQ 420

Query: 421 ELAFLQGYDTAFAQLDKEFDLPQKDLSTLIRMTQSNKGVLSAHRRKQYSYLPVAVLDRIE 480
           ELA+L+GYD AF++L+ E DLPQKDLS LIRM QSN+G LSAHRRKQY +LP  VLDRIE
Sbjct: 421 ELAYLKGYDAAFSELNDELDLPQKDLSALIRMIQSNRGRLSAHRRKQYGHLPAHVLDRIE 480

Query: 481 QVVRESLETVMMPRHP 496
           +VV  S +T   P  P
Sbjct: 481 EVVGRSFQTTTDPPAP 496


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,518,806
Number of extensions: 60972
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 409
Effective length of database: 1,198,455
Effective search space: 490168095
Effective search space used: 490168095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)