BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2518.p (983 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspiri... 1380 0.0 gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 386 e-108 gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 382 e-107 gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion s... 366 e-102 gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspiri... 323 5e-89 >gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 954 Score = 1380 bits (3572), Expect = 0.0, Method: Compositional matrix adjust. Identities = 699/946 (73%), Positives = 795/946 (84%), Gaps = 14/946 (1%) Query: 21 PDPLSPVISALFGPGLSQHARLITLDSAQPDGLPESLVVERFHGQESVNDNFHFDIDALS 80 PD L+ ++ LFG GLSQ+ARLIT+ +AQ GLPE+L VERF G+ESVNDNF FDIDALS Sbjct: 6 PDSLTAAVTELFGTGLSQNARLITMTTAQSAGLPETLAVERFEGEESVNDNFRFDIDALS 65 Query: 81 VSTDLDLKQFIGTELTLRLLQADGSRRAWHGYCTQASWLGADGGLARYRLRLESFLAFLE 140 +STDLDLKQFIG E++LRLLQADG RAWHGYCTQASWLGADGGLARYRLRLESFLAFL+ Sbjct: 66 ISTDLDLKQFIGAEISLRLLQADGGTRAWHGYCTQASWLGADGGLARYRLRLESFLAFLD 125 Query: 141 RRHDSFLFQDMDVTEIASALFKEYPQANFALNVTQTLIKRDICTQYRESDFHFLRRILAL 200 RRHDSFLFQDM VT+IA+A+ KEYPQANF+L VTQTL KRDICTQYRE+D+ FLRRILA Sbjct: 126 RRHDSFLFQDMTVTDIAAAVLKEYPQANFSLEVTQTLAKRDICTQYRETDYAFLRRILAS 185 Query: 201 EGLNFRFEHQQESDDAGQQGQQGQQGQQQARHKLIIFDRQAKMPAIPGADDTIRFHRVAA 260 EGLNFRFEH+Q DDA QQ Q Q ARHKL+IFDR AK PA+PG D+ IRFHRVAA Sbjct: 186 EGLNFRFEHEQ--DDATQQHDQSQP---HARHKLVIFDRNAKAPALPGGDEYIRFHRVAA 240 Query: 261 MEASDAITDFSAVRSVQSNGVALASWHPEKISSPSAEESSSLDAGDLPLLPIYDGTGQQD 320 MEASDAITDF+AVRSV+ NGVALASWHPEK+SSPS EE S+LDAG+LP LP+YDGTGQQD Sbjct: 241 MEASDAITDFAAVRSVRPNGVALASWHPEKLSSPSHEEGSTLDAGELPSLPVYDGTGQQD 300 Query: 321 FADQDAAATHALLMLQALEMQNKRFEGAGAARQLAAGTQFSLRQHDHYPAGENRFKVLSV 380 FADQDAAA HA LMLQALEMQNKRFEGAGAARQLAAG +F+L QH+ YP GEN FKV+SV Sbjct: 301 FADQDAAAAHAQLMLQALEMQNKRFEGAGAARQLAAGARFTLLQHERYPEGENAFKVVSV 360 Query: 381 KHSARNNFEHNIARILDDILPDSAQISDISA----EDELKAGTYRNRFTVVRDAVPILPT 436 +H+ARNN NI RIL P + + SA +D+L+AGTYRN FT +RD+VP++P Sbjct: 361 RHAARNNVSANITRIL---APAAGALFGGSAAAERDDDLQAGTYRNSFTAIRDSVPMVPA 417 Query: 437 AITQRLKPTSRGTQTALVTGLPGTAVTTDRNHRVKVQFHWQRGQSPNPGGLRETGNLDDK 496 AI +RLKPT+RGTQTALVTG AVTTDRNHRVKVQFHWQRG+SPNPGGLRETGNLDDK Sbjct: 418 AIAERLKPTARGTQTALVTGAADAAVTTDRNHRVKVQFHWQRGKSPNPGGLRETGNLDDK 477 Query: 497 QGNAPGNDASGTWVRVAEAQSGPNWGSQFTPRIGSEVLVDFIEGDIDRPVVVAQLYNGND 556 GNA GND+SGTW+RVAEAQSGPNWGSQF PR+GSEVLVDFIEGDIDRPVVVAQLYNG+D Sbjct: 478 DGNANGNDSSGTWIRVAEAQSGPNWGSQFIPRVGSEVLVDFIEGDIDRPVVVAQLYNGSD 537 Query: 557 TPPFPAGADSGVNHAGTISGWHSLSHDGSGFNQWVVDDTQSQLRMRLASSQARSQLNLGH 616 PPFPAGADSG+NHAG+ISGWHS +HDGSGFNQWVVDDTQSQLRMRLASS A+SQLNLGH Sbjct: 538 APPFPAGADSGINHAGSISGWHSTAHDGSGFNQWVVDDTQSQLRMRLASSTAKSQLNLGH 597 Query: 617 LIDQADSGAQRGNYRGQGFELRSDAWGVVRGENGLLLSATARPAAGASVTGTQMDATEAI 676 L++QAD+GAQRG+YRGQGFELRSDAWGVVRG GLLLS TARP GASVTGTQMDA AI Sbjct: 598 LVEQADTGAQRGSYRGQGFELRSDAWGVVRGGEGLLLSTTARPLNGASVTGTQMDAAGAI 657 Query: 677 AQLKGASELANNMGNAATQQQALHSAAAFQAKSDFIAAIDPADQGKHPASVNGQEAFKTK 736 AQLKGA LA M ++ATQQQAL S A QAK+DF+A IDP+DQGKHPASVNGQ+A K+ Sbjct: 658 AQLKGAKSLAQTMSDSATQQQALSSTQALQAKTDFLALIDPSDQGKHPASVNGQDALKSD 717 Query: 737 GELRQTDAAQPVEKFAKATVLMESPTNINWASAASTLLYAGESLHWTSQGDTHWTAAETT 796 G R TDAAQPVEKFAKA VLM+SP++INW S ASTLLYA E+L WT+QGD HW+AA+T Sbjct: 718 GSTRNTDAAQPVEKFAKAAVLMDSPSSINWTSNASTLLYAAENLQWTTQGDVHWSAADTA 777 Query: 797 SLAAGKAATLFAHEGGIQVYAGNGPVSLQAHTDTLEILADKDVSVISVNEGIEIKARQKI 856 S AAGKAA+ ++H+GGIQ +A NGPVSLQAHTD LEILADKDV+V SVN+ IEIKARQKI Sbjct: 778 SAAAGKAASFYSHDGGIQAFAANGPVSLQAHTDALEILADKDVTVTSVNDSIEIKARQKI 837 Query: 857 VLQAGQASVTLEGGNITFACPGTFSVKGGAHGFPGGARDSPEFPKLPDSRPHRYFERLRA 916 VLQAGQASVTLEGGNITFACPGTFSVKG H FPGGA SP+ LPD++ ++ F+ Sbjct: 838 VLQAGQASVTLEGGNITFACPGTFSVKGATHAFPGGASVSPDLMALPDTK-YKLFDEAFV 896 Query: 917 IDVTSGNPIAGLNYVFKLGDGTLRRGVTDEHGRTEQVSTAEMQEVQ 962 + +G P++ + Y K G + T + G +E+VST + V+ Sbjct: 897 VKDPNGTPLSDIPYRIKSSAGD-QLATTAKDGMSERVSTEASENVE 941 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 386 bits (992), Expect = e-108, Method: Compositional matrix adjust. Identities = 288/940 (30%), Positives = 433/940 (46%), Gaps = 117/940 (12%) Query: 36 LSQHARLITLDSAQPDGLPESLVVERFHGQESVNDNFHFDIDALSVSTDLDLKQFIGTEL 95 ++QH RL+ LDS+ P+ L+ +R E +ND + ID L+ T + L+Q I + Sbjct: 16 ITQHRRLLQLDSSLG---PDILLPQRLVATERLNDGYEVTIDLLATHTGIALEQLIAQPV 72 Query: 96 TLRLLQADGSRRAWHGYCTQASWLGADGGLARYRLRLESFLAFLERRHDSFLFQDMDVTE 155 TL + Q DG HGY A LG+DG L +L L +L FL R D+ ++QD + Sbjct: 73 TLWIRQHDGDTLPLHGYVHTAKRLGSDGELDFCQLSLSPWLHFLRFRKDARIWQDKRTED 132 Query: 156 IASALFKEYPQA--NFALNVTQTLIKRDICTQYRESDFHFLRRILALEGLNFRFEHQQES 213 I + +F +PQA ++ + + R CTQY E+D+HF++R++ EG + H+Q Sbjct: 133 ILADVFNNHPQARGHYRFQLERPYTPRPYCTQY-ETDWHFVQRLMEEEG--WFAHHEQRE 189 Query: 214 DDAGQQGQQGQQGQQQARHKLIIFDRQAKMPAIPGADDTIRFHRVAAMEASDAITDFSAV 273 D +G H L+I D +P +P I FH A + D I +SA Sbjct: 190 DGSG--------------HVLVITDNTWNLPGLP--QQGIAFHGAAPRDELDKILHWSAS 233 Query: 274 RSVQSNGVALASWHPEKISSP----SAEESSSLDAGDLPL-LPIYDGTGQQDFADQDAAA 328 R++ S G S + SP AEE + G LP L +Y+ TG F Q+ Sbjct: 234 RTLSSKGWRGRS---DDYKSPGMKKEAEEQVMPEYGQLPAQLEMYEYTGAYSFRLQEQGN 290 Query: 329 THALLMLQALEMQNKRFEGAGAARQLAAGTQFSLRQHDHY---PAGENRFKVLSVKHSAR 385 A L ++ E +R+ R LA G F L +H + P E +F +L++ Sbjct: 291 RQADLQVEQWESSMQRYSAVSGVRNLACGRWFRLEEHPQHRAEPDRERQFVILAIDWFVE 350 Query: 386 NN---------FEHNIARILDDILPDSAQISDISAEDELKAGTYRNRFTVVRDAVPILPT 436 NN F ++ L + ++ D G NRF V R +P P Sbjct: 351 NNLPLSHQALDFPGSLKGALMAFKESIRRERQVAETDNEHTGHCFNRFEVQRRKLPFRPA 410 Query: 437 AITQR--LKPTSRGTQTALVTGLPGTAVTTDRNHRVKVQFHWQRGQSPNPGGLRETGNLD 494 R + P QTA+V G V TD R+KVQF W R Sbjct: 411 RAHARPVMLP-----QTAIVVGPASEEVYTDHLDRIKVQFRWDRIN-------------- 451 Query: 495 DKQGNAPGNDASGTWVRVAEAQSGPNWGSQFTPRIGSEVLVDFIEGDIDRPVVVAQLYNG 554 PGN+A+ WVRV+ +G WG+ PRIG EV+V F+ GD DRPVV +L+N Sbjct: 452 ------PGNEAASCWVRVSYPNAGQYWGAIQVPRIGQEVIVSFLNGDPDRPVVTGRLFNA 505 Query: 555 NDTPPFPAGADSGVNHAGTISGWHSLSHDGSGFNQWVVDDTQSQLRMRLASSQARSQLNL 614 P + + G +SG S G+GFNQ V+DDT Q R+ L S+ +QLNL Sbjct: 506 EQRPQW--------HTNGRLSGVKSKEFGGTGFNQMVMDDTPEQNRIHLYSTNTHAQLNL 557 Query: 615 GHLIDQADSGAQRGNYRGQGFELRSDAWGVVRGENGLLLSATARPAAGASVTGTQMDATE 674 GHL+ Q +G +R ++ G GF L +DA+G + GL +S RP A GTQ+DA E Sbjct: 558 GHLVSQ--TGNERRSFFGSGFALSTDAYGAIVTHKGLYISTYGRPGA----QGTQLDARE 611 Query: 675 AIAQLKGASELANNMGNAATQQQALHSAAAFQAKSDFIAAIDPADQGKHPASVNGQEAFK 734 A QLK + L+ + A A G P + GQEA + Sbjct: 612 ATGQLKSGANLSRTLSETA------------------------AKAGAEP--LAGQEALR 645 Query: 735 TKGELRQTDAAQPVE----KFAKATVLMESPTNINWASAASTLLYAGESLHWTSQGDTHW 790 + Q D P + +F +A +L SP I + +AG + +S DT Sbjct: 646 DFIDATQADYEDPSQAQANRFQQAILLAASPDGIGLTTPKGVHTHAGGEITLSSGADTSI 705 Query: 791 TAAETTSLAAGKAATLFAHEGGIQVYAGNGPVSLQAHTDTLEILADKDVSVISVNEGIEI 850 ++ + + +LFA + GI++++ G V +QA +D LE++A+K ++S + +EI Sbjct: 706 AVGKSLLASVAEKISLFAFKAGIKLFSAKGKVEVQAQSDDLELIAEKVARLLSASGRVEI 765 Query: 851 KARQKIVLQAGQASVTLEGGNITFACPGTFSVKGGAHGFPGGARDSPEFPKLPDSRPHRY 910 +A++++++ AG + + L IT G + K G H PG + E K + P + Sbjct: 766 RAKEEVLITAGGSFIRLNASGITQGTSGAWEAKAGTHAMPGPTTLAYEMNKSSAALP--F 823 Query: 911 FERLRAIDVTSGNPIAGLNYVFKLGDGTLRRGVTDEHGRT 950 E +P+ + GDGT RGVTD G+T Sbjct: 824 DEEFVLRWPYDQSPVKNRRFEIVRGDGTKVRGVTDAQGKT 863 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 382 bits (982), Expect = e-107, Method: Compositional matrix adjust. Identities = 286/947 (30%), Positives = 457/947 (48%), Gaps = 108/947 (11%) Query: 22 DPLSPVISALFGPGLSQHARLITLDSAQPDGLPESLVVERFHGQESVNDNFHFDIDALSV 81 D + +SAL + Q R++ LDS P+ L+ +R G E + + + ID +S Sbjct: 14 DNVLTTLSALADTFVGQEKRILKLDSVLG---PDVLLPQRMVGSERLGRGYDYTIDLVST 70 Query: 82 STDLDLKQFIGTELTLRLLQADGSRRA-WHGYCTQASWLGADGGLARYRLRLESFLAFLE 140 D++LK+ I +TL LQ DGS A HGY A LG+DG LA +++ + +L FL+ Sbjct: 71 RDDIELKKLIAQPVTL-WLQQDGSDYAPLHGYVHTARRLGSDGQLASFQIGMAPWLHFLK 129 Query: 141 RRHDSFLFQDMDVTEIASALFKE--YPQANFALNVTQTLIKRDICTQYRESDFHFLRRIL 198 R D+ ++QD +I + +F + Y + N+ + + R CTQY E+D+HF++R++ Sbjct: 130 YRKDARIWQDSKADDILADVFDQHAYARGNYRFEIVTPALPRSYCTQY-ETDWHFVQRLM 188 Query: 199 ALEGLNFRFEHQQESDDAGQQGQQGQQGQQQARHKLIIFDRQAKMPAIPGADDTIRFHRV 258 EG + H+Q+ D +G H L+I D + A P A + + FH Sbjct: 189 EEEG--WYAYHEQKPDGSG--------------HVLVITDNTDQ--AKPLAPEQLAFHGA 230 Query: 259 AAMEASDAITDFSAVRSVQSNGVALASWHPEKISSPS----AEESSSLDAGDLP-LLPIY 313 + + I +SA R + S +A + + SP +E + G LP L +Y Sbjct: 231 GTQDEVNRILHWSASRGLASTRLATRT---DDYKSPGDQKQTQERVLPEHGALPGELEVY 287 Query: 314 DGTGQQDFADQDAAATHALLMLQALEMQNKRFEGAGAARQLAAGTQFSLRQHDHYPAG-- 371 + +G +A QD A L ++ E KRF G AR LAAG F+L H + Sbjct: 288 EYSGPYSYAKQDDGDRQARLRVEQWESSMKRFMGVSGARTLAAGRWFTLTDHPAHRGDSK 347 Query: 372 -ENRFKVLSVKHSARNN---------FEHNIARILDDILPDSAQISDISAEDELKAGTYR 421 +++F +++V+ NN F ++ LD + +D A + G Sbjct: 348 QDSQFMLIAVEWFIENNLPLSGTARDFPGSLKPQLDAFKASMGRSND-DAGGNARTGHCF 406 Query: 422 NRFTVVRDAVPILPTAITQRLKPTSRGTQTALVTGLPGTAVTTDRNHRVKVQFHWQRGQS 481 NRF V R +P + KP QTA+V G G V TD+ +RVKVQF W R Sbjct: 407 NRFEVQRRKLPY--RSPFDHTKPVMH-PQTAVVVGPQGEEVFTDKLNRVKVQFRWDRIN- 462 Query: 482 PNPGGLRETGNLDDKQGNAPGNDASGTWVRVAEAQSGPNWGSQFTPRIGSEVLVDFIEGD 541 PG++ + WVRV+ +G NWG PR+G E+++ F+ GD Sbjct: 463 -------------------PGDEKASCWVRVSYPNAGENWGEVKVPRVGQELIISFLNGD 503 Query: 542 IDRPVVVAQLYNGNDTPPFPAGADSGVNHAGTISGWHSLSHDGSGFNQWVVDDTQSQLRM 601 DRPV +L+N P + + G +SG S G+GFNQ V+DDT SQ R+ Sbjct: 504 PDRPVATGRLFNQEQPPQW--------HTDGRLSGLKSKEFGGNGFNQLVMDDTTSQNRV 555 Query: 602 RLASSQARSQLNLGHLIDQADSGAQRGNYRGQGFELRSDAWGVVRGENGLLLSATARPAA 661 L SSQ+ +QLNLG+L+ QAD+ +R N+ G GF L +D +G V + GL LS+ RP Sbjct: 556 HLYSSQSNAQLNLGYLVSQADN--ERRNFYGSGFALSTDDYGAVVTQKGLYLSSYGRPGP 613 Query: 662 GASVTGTQMDATEAIAQLKGASELANNMGNAATQQQALHSAAAFQAKSDFIAAIDPADQG 721 GTQ+DA+EA + +K +++LA + ++A++ A A A + DF+ A + G Sbjct: 614 ----QGTQLDASEATSLMKASADLARGLSDSASRAGA--EALAQDSLKDFVDATEDKYSG 667 Query: 722 KHPASVNGQEAFKTKGELRQTDAAQPVEKFAKATVLMESPTNINWASAASTLLYAGESLH 781 + S N +F K ++M +P I A+ T +++ + Sbjct: 668 QGQGSAN---------------------RFKKPLLMMAAPAGIGLATDQGTQVHSAQETT 706 Query: 782 WTSQGDTHWTAAETTSLAAGKAATLFAHEGGIQVYAGNGPVSLQAHTDTLEILADKDVSV 841 TS DT + ++ + +LFA G++++A G V +QA +D L+++A+K + Sbjct: 707 LTSGKDTSIASGKSLLATVKEKISLFAQNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARL 766 Query: 842 ISVNEGIEIKARQKIVLQAGQASVTLEGGNITFACPGTFSVKGGAHGFPGGARDSPEFPK 901 +S + +EI A+ ++++ AG + + + IT PG + K H PG A + P Sbjct: 767 LSTSGRVEIHAKDEVMISAGGSFIQINSAGITQGTPGKWEAKASLHSMPGPASQNFVMPH 826 Query: 902 LPDSRPHRYFERLRAIDVTSGNPIAGLNYVFKLGDGTLRRGVTDEHG 948 + S R + G P+AG Y L DG++R+G D G Sbjct: 827 VQKSELQPSDMEFRHL-TDWGEPLAGAAYKAILSDGSVRKGTLDAQG 872 >gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 944 Score = 366 bits (940), Expect = e-102, Method: Compositional matrix adjust. Identities = 291/937 (31%), Positives = 445/937 (47%), Gaps = 106/937 (11%) Query: 28 ISALFGPGLSQHARLITLDS-AQPDGLPESLVVERFHGQESVNDN------------FHF 74 + ALFG SQ AR++ L + D P +L+ ER E V + Sbjct: 6 LPALFG-AWSQSARVMRLHTPLDQDYGPHALMAERLQAVEQVGPGEDSSAIDQAIAGYRL 64 Query: 75 DIDALSVSTDLDLKQFIGTELTLRLLQADGSRRAWHGYCTQASWLGADGGLARYRLRLES 134 + LS++ D+ L++ +G + L L DG RA+HG+ T GA+GG+ARY L +E Sbjct: 65 QLSCLSLNADISLRKLLGQPVLLEL-DTDGGARAFHGHVTACRMEGANGGMARYLLTIEP 123 Query: 135 FLAFLERRHDSFLFQDMDVTEIASALFKEY-------PQANFALNVTQTLIKRDICTQYR 187 +L+FL R DS +FQDM I A+F +Y P L KR + TQY+ Sbjct: 124 WLSFLRHRRDSAVFQDMSAPAIIEAVFADYRGQGRLQPAWRLDLQDASAYAKRSLATQYQ 183 Query: 188 ESDFHFLRRILALEGLNFRFEHQQESDDAGQQGQQGQQGQQQARHKLIIFDRQAKMPAIP 247 E+D F+ R++ EGL + EHQ +S+ A H ++I D P Sbjct: 184 ETDLAFVTRLMVEEGLFYYIEHQGDSNSA-----------SLGSHTVVIADHNGSFK--P 230 Query: 248 GADDTIRFHRVAAMEASDAITDFSAVRSVQSNGVALASWHPEKISSPSAEESSS-LDAGD 306 A T+ F + A+ A D I + +VR Q+N V + +W + + +A +SS +A D Sbjct: 231 NARSTVAFAQTNAVMAQDNIDRWRSVRRWQTNAVEILTWDYRQTAVRAASTASSGENAHD 290 Query: 307 LPLLPIYDGTGQQDFADQDAAATHALLMLQALEMQNKRFEGAGAARQLAAGTQFSL-RQH 365 +L D GQ + A AL +QA+E++NK F GAG R GT F+L + Sbjct: 291 KLVLTSRDAPGQYINESPEQAQRQALNQMQAIEVRNKVFTGAGTVRSFLPGTTFTLTGHY 350 Query: 366 DHYPAGENRFKVLSVKHSARNNFEHNIARILDDILPDSAQISD-----------ISAEDE 414 DH +++F +L V H A NN ++ + +L AQ+ D + + D Sbjct: 351 DHDGGDDDQFVLLRVVHQAHNNLSADLKAGVTALL-GQAQLDDHDHKGSLLDTALRSADT 409 Query: 415 LKAGTYRNRFTVVRDAVPILPTAIT---QRL--KPTSRGTQTALVTGLPGTAVTTDRNHR 469 YRNRF +R+ +P P + +RL KP + G Q+A+V G G AV TDR++R Sbjct: 410 QARPVYRNRFEAIRNKIPYRPLLVDAQGERLYPKPQAHGQQSAVVVGAQGQAVHTDRDNR 469 Query: 470 VKVQFHWQRGQSPNPGGLRETGNLDDKQGNAPGNDASGTWVRVAEA---QSGPNWGSQFT 526 ++VQFHWQRG+ + G + DD G AP N+ +GTWVRV +G NWG Q Sbjct: 470 IRVQFHWQRGERSHSG--LSSPTPDDHVG-APANEQAGTWVRVLAGLAPTAGANWGGQAV 526 Query: 527 PRIGSEVLVDFIEGDIDRPVVVAQLYNG-------------------NDTPPFPAGADSG 567 PR+G EVL+DFIEGDIDRPVV+ LYNG + P + G+ Sbjct: 527 PRVGQEVLIDFIEGDIDRPVVIGTLYNGRGVDNAQGNQAGQGAGSATGNAPAWFPGSSGA 586 Query: 568 VNHAGTISGWHSLS-----HDGSGFNQWVVDDTQSQLRMRLA----SSQARSQLNLGHLI 618 NHA +SG + + G G+NQ V DD+ Q R L + S+LNLG L Sbjct: 587 HNHAAVLSGIKTQALSASQSGGGGYNQLVFDDSPGQARAALQQHADAHDGASELNLGLLR 646 Query: 619 DQADSGAQRGNYRGQGFELRSDAWGVVRGENGLLLSATARPAAGASVTGTQMDATEAIAQ 678 Q D+ QR GQGFEL++ +R GLL+S +A Q+D T+ ++Q Sbjct: 647 QQTDN--QRLATTGQGFELKTLYSAALRAGQGLLVSTEKSISA-------QLDMTQGLSQ 697 Query: 679 LKGASELANNMGNAATQQQALHSAAAFQAKSDFIAAID------PADQGKHPASVNGQEA 732 L +++ + A + A + AK + A+ A Q S Sbjct: 698 LSESAQKQQQLAETAQKHNARLEGESDAAKLPAVEAMGESIEVLKATQSASTGSSGSDGQ 757 Query: 733 FKTKGELRQTDAAQPVEKFAKATVLMESPTNINWASAASTLLYAGESLHWTSQGDTHWTA 792 + +A ++ + A + +P + A+ ++ + AG+ ++ +QG+ H+ + Sbjct: 758 GSSATTATTAFSAPQLQLSSPAGIAAVTPASAIIAAGVTSSVTAGKDINQIAQGNLHYLS 817 Query: 793 AETTSL-AAGKAA--TLFAHEGGIQVYAGNGPVSLQAHTDTLEILADKDVSVISVNEGIE 849 SL GKA+ + E G+ ++A G VS+Q+ + + K ++V SV + + Sbjct: 818 KSGISLFTYGKASNGSKPNQETGMALHAAAGKVSVQSQAGQTLLTSAKQLTVASVGKDVS 877 Query: 850 IKARQKIVLQAGQASVTLEGGNITFACPGTFSVKGGA 886 + +Q + L A A + LEGGNI PG + A Sbjct: 878 VAGKQHVQLAAQGAWLRLEGGNIEVHGPGAMEFRASA 914 >gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 982 Score = 323 bits (828), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 300/1004 (29%), Positives = 440/1004 (43%), Gaps = 201/1004 (20%) Query: 43 ITLDSAQPDGLPESLVVERFHGQESVNDNFHFDIDALSVSTDLDLKQFIGTELTLRLLQA 102 ++L A P G L+VE F E ++ ++ LS+ L LK IG TL + Sbjct: 20 LSLGDAAPAG---ELLVEAFAASEGLHAVGLREVIVLSLDAGLRLKSLIGQRATLVTTLS 76 Query: 103 DGSRRAWHGYCTQASWLGADGGLARYRLRLESFLAFLERRHDSFLFQDMDVTEIASALFK 162 DGSR + G +A+ LG++GGLARYRLR+ ++ L + H+S ++QD V +I +F Sbjct: 77 DGSRTQFSGLVNEAAKLGSEGGLARYRLRIVPWVWLLSQSHNSRVWQDKTVIDIVEDVFA 136 Query: 163 EY-PQANFALN-----VTQTLIKRDICTQYRESDFHFLRRILALEGLNFRFEHQQESDDA 216 +Y P A + Q + R QYRES+ F+ R+LA EGL++R E ES DA Sbjct: 137 DYAPHAAWTWTDEVAPFMQQVQPRSYTIQYRESNLAFVSRLLAAEGLSWRVE---ESADA 193 Query: 217 GQQGQQGQQGQQQARHKLIIFDRQAKMPAIPG--------ADDTIRFHRVAAMEASDAIT 268 + H+L++F A P IRFH A E D+I Sbjct: 194 A------------SGHRLVLFADSTSPRAFPEDLTSTSPLGGSGIRFHAGTAREEQDSIQ 241 Query: 269 DFSAVRSVQSNGVALASWHPEK-----ISSPSAEESSSLDAGDLPLLPIYDGTGQQDFAD 323 +A R++Q L S+ + S P+ E DA P L YD G + D Sbjct: 242 ALAARRALQPASFTLLSYDYKSKQAVATSLPTRHEFGGKDA---PRLESYDSPGLYAYTD 298 Query: 324 QDAAATHALLMLQALEMQNKRFEGAGAARQLAAGTQFSLRQ--------HDHYPAGENRF 375 A +A L L+A E +NK ++ R L GT+F+L D P ++ Sbjct: 299 AAEADHYARLHLEASEARNKLWQARSTVRTLRPGTRFTLADGPLGLSAAQDGAP---RQY 355 Query: 376 KVLSVKHSARNNFEHNIAR-----------ILDDIL---------------PDSAQI--- 406 VLSV NN + A +L+D + PDS Q+ Sbjct: 356 AVLSVMSVGVNNLPKDAAEGLAELFGPIPPLLEDCVAACEEGQSLLHGQSGPDSLQLLGQ 415 Query: 407 SDISAE-DELKAGTYRNRFTVVRDAV---PILPTAITQRL--KPTSRGTQTALVTGLPGT 460 +DI+ + + Y N F +R V P+L RL + T+RG+Q+A+V G G Sbjct: 416 TDIAGVIAQARQLGYANAFEAIRADVIWRPVLADGTGLRLHARATARGSQSAIVVGPQGE 475 Query: 461 A-------VTTDRNHRVKVQFHWQRGQSPNPGGLRETGNLDDKQGNAPGNDASGT-WVRV 512 + DR RV+++FHWQ NDA+ T WVRV Sbjct: 476 TSASSAGEIHCDRLGRVRIRFHWQ----------------------GRNNDAAATCWVRV 513 Query: 513 AEAQSGPNWGSQFTPRIGSEVLVDFIEGDIDRPVVVAQLYN------------------G 554 A+ + G QF PRIG EVLV FIE DIDRPV+V LYN G Sbjct: 514 AQRAASGGAGMQFLPRIGQEVLVQFIEDDIDRPVIVGALYNGRGEGAAAPTPGGDTAQAG 573 Query: 555 NDTP--PFPAGADSGVNHAGTISG-----WHSLSHD-------------------GSGFN 588 +D P F + D + G ++G WH S D GSG+N Sbjct: 574 SDDPARAFTSATDLQASGQGNLAGGNAPTWHGGSQDSDGHGNTAAQWGIRSKEFGGSGYN 633 Query: 589 QWVVDDTQSQLRMRLASSQARSQLNLGHLIDQADSGAQRGNYRGQGFELRSDAWGVVRGE 648 Q V DDT +Q R++L ++Q+ S+LNLGHLI AD+ RG++RG G ELR+DA+G +R Sbjct: 634 QIVFDDTDAQGRIQLKTTQSGSELNLGHLIHTADN--YRGSFRGTGAELRTDAYGALRAG 691 Query: 649 NGLLLS-------ATARPAAGASVTGTQM------------DATEAIAQLKGASELANNM 689 G+L S A +R AG +V G + +AT + AS L Sbjct: 692 GGILFSSYKIEQNAASRDPAGDNVGGMALLKQAALLGKTFNEATLTHKTVGLASHLGPTQ 751 Query: 690 GNAATQQQALHSAAAFQAKSDFIAAIDPADQGKHPASVNGQEAFKTKGELRQTDAAQPVE 749 +A+T + A + + + P + G A+ N Q GE + + Sbjct: 752 ASASTINDSAAPLEAIRVAASGMVDGSPENSGADVAAANTQ-----TGESK-------LP 799 Query: 750 KFAKATVLMESPTNINWASAASTLLYAGESLHWTSQGDTHWTAAETTSLAAGKAATLF-- 807 A + + + + + L GE+++ S D+ A L +G+A + Sbjct: 800 HSTAALIGIAAKEGLGAVAGQHMQLANGETVNLLSGADSQQVAGNQYRLRSGQALGVLAG 859 Query: 808 -----AHEGGIQVYAGNGPVSLQAHTDTLEILADKDVSVISVNEGIEIKARQKIVLQ-AG 861 G+Q+ A + +QA D L + A V VIS N G++ A +KI L AG Sbjct: 860 AMAAGEGGTGLQMIAAQKNIDVQAQADGLTVQARDQVRVISANAGVDWAAAKKITLSTAG 919 Query: 862 QASVTLEGGNITFACPGTFSVKGGAHGFPGGARDSPEFPKLPDS 905 A++T+EGGNIT CPG ++ F G + P++P+S Sbjct: 920 GANITIEGGNITVQCPGKLTIHAAQKLFAGPVSKTLPLPQMPNS 963 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.131 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,165,780 Number of extensions: 138896 Number of successful extensions: 480 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 406 Number of HSP's successfully gapped: 9 Length of query: 983 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 888 Effective length of database: 1,170,045 Effective search space: 1038999960 Effective search space used: 1038999960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)