BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2514.p
         (260 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311596|ref|YP_003775688.1| hypothetical protein Hsero_2281...   416   e-117

>gi|300311596|ref|YP_003775688.1| hypothetical protein Hsero_2281
           [Herbaspirillum seropedicae SmR1]
          Length = 269

 Score =  416 bits (1069), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 200/251 (79%), Positives = 222/251 (88%)

Query: 10  NKGSLMKKKILCLSWLMLAATQSAFAAHPLVTDDAGVQGSGGIQLEMNTDWSKQSGNAGH 69
           N+GS M KKIL +S L+LAA+Q  FAAHPLVTDDAGVQG+GGIQ+E NTDWS+Q+G A H
Sbjct: 19  NRGSPMTKKILGISCLLLAASQPVFAAHPLVTDDAGVQGAGGIQIETNTDWSRQNGAASH 78

Query: 70  VGAFSFTYGVTDKLDLFFNLPQTFQSPTGTGVGDVSVGAKWRYYEADGLSLALKPEFFIP 129
           VGAF+FTYGVTD LDLF NLPQTFQSPTGTGVGDVSVGAKWR++EADGL+LA KPEFF+P
Sbjct: 79  VGAFTFTYGVTDHLDLFTNLPQTFQSPTGTGVGDVSVGAKWRWHEADGLALAFKPEFFMP 138

Query: 130 SGDETKGLGTGENSAGLTGIVSYETGPWTLHGNLGLRHNSYKLASDQQSQHSTLWRASAA 189
           SGDE KGLGTG+N  GLTGI SYETGPWTLHGN+G+R N ++   DQQS   T+WRASAA
Sbjct: 139 SGDEQKGLGTGKNGLGLTGIASYETGPWTLHGNIGVRLNRFQREEDQQSMRKTVWRASAA 198

Query: 190 VWYGLNEQWRLVADTGVAQNPNVGSKTLPSYALLGVIWSPNKTVDLDAGAKFGLNKVEVT 249
           VWYGLNEQWRLVADTG+AQN +  SK LPSYAL+GVIWSPNKTVDLDAGAKFGLNK EVT
Sbjct: 199 VWYGLNEQWRLVADTGLAQNADAASKKLPSYALVGVIWSPNKTVDLDAGAKFGLNKAEVT 258

Query: 250 RQFGVGVTLHF 260
           RQFGVGVTLHF
Sbjct: 259 RQFGVGVTLHF 269


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 917,525
Number of extensions: 41780
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,226,865
Effective search space: 217155105
Effective search space used: 217155105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)