BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2509.p
         (238 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase [H...   100   7e-23
gi|300312992|ref|YP_003777084.1| phosphoglycolate phosphatase [H...    72   4e-14

>gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 226

 Score =  100 bits (250), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 90/191 (47%), Gaps = 3/191 (1%)

Query: 10  QAFIFDLDGTLIDSAPDIAAAVNAYLQEQGHAALEVAYVERFIGNGPRRLIEDILIDQEI 69
           +A I DLDGT++D+A D   AVN    + G   L    +  F+G G   LI  +L   + 
Sbjct: 8   KAAIIDLDGTMLDTAADFHVAVNRMRDDLGLTPLSQETIVNFVGKGTENLIRRVLA-VDY 66

Query: 70  AFDGAG--LEAAVAAYIGHYQRHPASHTRFFPYVKEDLASLHAAGIRLGICTNKPHALTR 127
           A D A    + A+AA   HY      ++  +P V E L +L   G+RL   TNKP A   
Sbjct: 67  AEDEAAQYFQQALAACTEHYLAINGDYSSLYPGVLEGLQALRNKGLRLACVTNKPLAFAV 126

Query: 128 QILDLLQLSPLVEVALGADAVPACKPDPGHLRAVAAHMALAPGSWAYIGDTTVDQATAAA 187
            +L    L    E+  G D+ P  KPDP  L  V    ALAP     IGD++ D   A A
Sbjct: 127 PLLQKKGLRDFFEIVYGGDSFPKKKPDPMPLLQVCQDFALAPAQVVAIGDSSNDAQAARA 186

Query: 188 ADAPFFVVPWG 198
           A      VP+G
Sbjct: 187 AGCRVLNVPYG 197


>gi|300312992|ref|YP_003777084.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 218

 Score = 72.0 bits (175), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 81/192 (42%), Gaps = 4/192 (2%)

Query: 7   RRYQAFIFDLDGTLIDSAPDIAAAVNAYLQEQGHAALEVAYVERFIGNGPRRLIEDILID 66
           R  +A +FDLDGTL D+APD+AAA N   Q++G        +      G R LI   L  
Sbjct: 4   RPPRAILFDLDGTLADTAPDLAAAANFLRQQRGLEDAPYEQLRPVASAGARGLIGAAL-- 61

Query: 67  QEIAFDGAGLEAAVAAYIGHYQRHPASHTRFFPYVKEDLASLHAAGIRLGICTNKPHALT 126
             I       E     ++  YQ +  +H+R F  + E L  L A GI  GI TNK    T
Sbjct: 62  -GIRPGEDEYEELRVRFLDRYQANMTTHSRLFDGIPELLVQLEARGIAWGIVTNKAARFT 120

Query: 127 RQILDLLQLSPLVEVALGADAVPACKPDPGHLRAVAAHMALAPGSWAYIGDTTVDQATAA 186
             +   + L     +  G D  P  KP P  L   A  + L P    Y+GD   D     
Sbjct: 121 DVLAPQIGLGHAGCIVSG-DTTPHSKPHPAPLLEAARRLQLTPEDCWYVGDDLRDIQAGK 179

Query: 187 AADAPFFVVPWG 198
           AA  P     WG
Sbjct: 180 AAAMPTIAAAWG 191


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 783,782
Number of extensions: 33288
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 2
Length of query: 238
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 156
Effective length of database: 1,231,600
Effective search space: 192129600
Effective search space used: 192129600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)