BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2507.p
         (237 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312758|ref|YP_003776850.1| ribose 5-phosphate isomerase [H...   130   7e-32

>gi|300312758|ref|YP_003776850.1| ribose 5-phosphate isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 223

 Score =  130 bits (328), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 93/229 (40%), Positives = 134/229 (58%), Gaps = 16/229 (6%)

Query: 3   LNQNEAKKLAGRHAILEFVRDDMRLGLGSGTTSHFFVRELAK--HIADGLNVTCTATSRS 60
           + Q+E K+   + AI E+V D   +G+G+G+T++FF+ EL K  H   G      A+S +
Sbjct: 1   MTQDELKQAVAKAAI-EYVVDGEIIGVGTGSTANFFIDELGKIKHRIKG----AVASSEA 55

Query: 61  TIDVAREVGIPIMDPNEIGQIDLTIDGPDEIDREFRMIKGGGACLLWEKIIAHASTRMIT 120
           T +  R  GI + D NE+  + + IDG DEI+    MIKGGGA L  EKI+A  + + + 
Sbjct: 56  TAERLRSHGITVFDLNEVETMPVYIDGADEINGGGAMIKGGGAALTREKIVASVAQKFVC 115

Query: 121 ICDESKLVEHLGAFPLPVEVVQFAWKQTERRVAGLLREFGIDARIVRRSRDERPVVTDSG 180
           I D SKLVE LG FPLPVEV+  +     R++A L    G + R+  R +D +PVVTD+G
Sbjct: 116 IADGSKLVEVLGKFPLPVEVIPMSHAVVARKLAAL----GGEPRL--RVKDGKPVVTDNG 169

Query: 181 HFILDCHCQVIDGAELLETELNRIPGVVENGLFTREAAGMVVGCFDGTS 229
            +I+D     I     +E ++N I GVV NGLF R+ A +   C  GT+
Sbjct: 170 CYIIDVLGLSITDPADVEDKINNIVGVVTNGLFARQGANV---CLLGTA 215


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 744,612
Number of extensions: 30826
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 155
Effective length of database: 1,231,600
Effective search space: 190898000
Effective search space used: 190898000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)