BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2505.p (507 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 276 3e-75 gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 274 1e-74 gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [H... 274 1e-74 gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 263 2e-71 gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase... 253 3e-68 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 276 bits (705), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 176/495 (35%), Positives = 274/495 (55%), Gaps = 7/495 (1%) Query: 15 LRVENLSKRYGAFHALRGITLGIRRGTIHGLLGENGAGKSTLVGLISGQRVPSEGRIFLD 74 L++ + K +GA AL + L IR G IH L+GENGAGKSTL+ ++SG P +G I LD Sbjct: 7 LQMRGIRKSFGATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQGEILLD 66 Query: 75 GEEIQGADVKRMEAAGVFLVPQEPMIIEHMSVMENLMLGLWPAKR-GFV--AWRRMRENA 131 G + D AAG+ L+ QE + ++SV N+ +G R G + A R R +A Sbjct: 67 GRPVALRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRLGLIDHAAMRSRTDA 126 Query: 132 ARMLAGTGIDAERLAGTLDAVARRKLNILRAMFSGGSIIILDEPTAALTVPDRLQLFAFM 191 G G A LAG L ++++ I RA+ I+I+DEPTAAL+ + QLF + Sbjct: 127 VLRQLGAGFGASDLAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETEQLFNVV 186 Query: 192 RQLRASGVTFIFISHFNDEILDICDAVSVLRDGELVATCEEVCSLSSSQLSEFVLGRELD 251 R+LR G+ I+ISH E+ + D V+VLRDG V + S ++ + ++GR L Sbjct: 187 RRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELVR-DEIDSERIVQMMVGRSLS 245 Query: 252 LFQRDRRPAHALVSAEVISLFGVSGLNDDKLCVDRLELQPGEIIGFTGLPGEGAKELARG 311 F + +R A A +A++ ++ V L K+ +++ GE++GF GL G G ELAR Sbjct: 246 EFYQHQRIAPA-DAAQLPTVMQVRALAGGKIRPASFDVRAGEVLGFAGLVGAGRTELARL 304 Query: 312 LFGLLPLRSGQISFPREPACSLPQRPDQALAMGIAYLSDDRRRDGVVGHLSIRENIALSS 371 LFG P G I P +P A+ GIAY+ +DR+ G+ +++ N ++ Sbjct: 305 LFGADPRSGGDILLEGRPVHI--DQPRAAMRAGIAYVPEDRKGQGLFLQMAVAANATMNV 362 Query: 372 LPRRLRAGLVDEGEERQVCTSYFRRMGIKADSAEDAVNTLSGGNQQKVCLGRVLATLPRL 431 R R GLV V + +R+ +K E V LSGGNQQKV L R L P++ Sbjct: 363 ASRHTRLGLVRSRSLGGVARAAIQRLNVKVAHPETPVGKLSGGNQQKVLLARWLEIAPKV 422 Query: 432 LILDEPTRGIDVGVKQDVLRILDQLSQAGVSVIIVSTDVDELARAADRICIFQRGRIAHV 491 LILDEPTRG+D+ K ++ +++ +L+ GV+V+++S+++ E+ DR+ + + G I Sbjct: 423 LILDEPTRGVDIYAKSEIYQLVHRLASQGVAVVVISSELPEVIGICDRVLVMREGMITGE 482 Query: 492 VSGDDISTDRLRQLA 506 ++G I+ + + +LA Sbjct: 483 LAGAAITQENIMRLA 497 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 274 bits (701), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 174/499 (34%), Positives = 279/499 (55%), Gaps = 15/499 (3%) Query: 13 LALRVENLSKRYGAFHALRGITLGIRRGTIHGLLGENGAGKSTLVGLISGQRVPSEGRIF 72 +ALR N+ KR+ AL + G +H L+GENGAGKSTL+ ++SG G I Sbjct: 23 IALR--NVCKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDIL 80 Query: 73 LDGEEIQGADVKRMEAAGVFLVPQEPMIIEHMSVMENLMLGLWPAKRG--FVAWRRMREN 130 LDG+ ++ + ++ +A G+ ++ QE ++ H+S +N+ +G P K F+ + Sbjct: 81 LDGKPVEITEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKAMGLFIDEDELNRQ 140 Query: 131 AARMLAGTGIDAE--RLAGTLDAVARRKLNILRAMFSGGSIIILDEPTAALTVPDRLQLF 188 AA + A +D + G L ++ + I +A+ ++I+DEPTAAL + +LF Sbjct: 141 AAAIFARMRLDMDPSTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAELF 200 Query: 189 AFMRQLRASGVTFIFISHFNDEILDICDAVSVLRDGELVATCEEVCSLSSSQLSEFVLGR 248 +R L+A GV ++ISH DE+ I D VSV+RDG+ +AT + S + ++GR Sbjct: 201 RIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVP-MQETSMDTIISMMVGR 259 Query: 249 ELDLFQRDRRPAHALVSAEVISLFGVSGLNDDKLCVD-RLELQPGEIIGFTGLPGEGAKE 307 LD QR P + V+ V GLN + D L+ GEI+GF GL G G E Sbjct: 260 ALDGEQR--IPPDTSRNDVVLE---VRGLNRGRAIRDVSFTLRKGEILGFAGLMGAGRTE 314 Query: 308 LARGLFGLLPLRSGQISFPREPACSLPQRPDQALAMGIAYLSDDRRRDGVVGHLSIRENI 367 +AR +FG PL +G+I ++ + P A+A GI YLS+DR+ G+ + ++ NI Sbjct: 315 VARAIFGADPLEAGEIII--HGGKAVIKSPADAVAHGIGYLSEDRKHFGLAVGMDVQANI 372 Query: 368 ALSSLPRRLRAGLVDEGEERQVCTSYFRRMGIKADSAEDAVNTLSGGNQQKVCLGRVLAT 427 ALSS+ R R G +D+ R+ Y R++ IK S E LSGGNQQK+ + + L Sbjct: 373 ALSSMGRFTRVGFMDQRAIREAAQMYVRQLAIKTPSVEQQARLLSGGNQQKIVIAKWLLR 432 Query: 428 LPRLLILDEPTRGIDVGVKQDVLRILDQLSQAGVSVIIVSTDVDELARAADRICIFQRGR 487 +L DEPTRGIDVG K ++ ++LD L++ G +++++S+++ E+ R + R+ + GR Sbjct: 433 DCDILFFDEPTRGIDVGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRVLVMCEGR 492 Query: 488 IAHVVSGDDISTDRLRQLA 506 I ++ D + +++ QLA Sbjct: 493 ITGELARADATQEKIMQLA 511 >gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 546 Score = 274 bits (701), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 189/496 (38%), Positives = 272/496 (54%), Gaps = 35/496 (7%) Query: 15 LRVENLSKRYGAFHALRGITLGIRRGTIHGLLGENGAGKSTLVGLISGQRVPSEGRIFLD 74 L + + KR+ AL+ + +R G + LLGENGAGKSTLV +++G P EG I L Sbjct: 36 LSLSGIGKRFQGVVALQDVGFTVRPGEVMALLGENGAGKSTLVKILTGIHQPDEGSIHLG 95 Query: 75 GEEIQGADVKRMEAAGVFLVPQEPMIIEHMSVMENLMLGLWP----AKRGFVAWRRMREN 130 G E++ A + G+ V QE ++ E +SV EN+ +G P +R + WRRM + Sbjct: 96 GREVRFASAQDAMRGGITAVHQETVMFEELSVAENIWIGRQPLCGTPRR--IDWRRMEDE 153 Query: 131 AARMLAGTGIDAERLAGTLD-AVARRKL-NILRAMFSGGSIIILDEPTAALTVPDRLQLF 188 A + A +D A D +VA+R I RA+ ++I+DEPTAAL+ + +L+ Sbjct: 154 ARALFARLEVDLPVRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSHHEIGELY 213 Query: 189 AFMRQLRASGVTFIFISHFNDEILDICDAVSVLRDGELVATCEEVCSLSSSQLSEFVLGR 248 + QLR +G IFISH DEI + D +VLRDG +A+ E + ++ QL ++GR Sbjct: 214 RIIGQLRRAGTAVIFISHKFDEIYAVADRYTVLRDGRFIASGE-LADITEQQLVALMVGR 272 Query: 249 EL-DLFQRDRRPAHALVSA--EVISLFGVSGLNDDKLCVDRLELQPGEIIGFTGLPGEGA 305 E+ +F R + EV L S +D V +PGEI+GF GL G G Sbjct: 273 EVGQVFSRAASNTEDQTAPVLEVKHLSHPSEFDDVSFAV-----RPGEILGFYGLVGAGR 327 Query: 306 KELARGLFGLLPLRSGQISFP-RE-PACSLPQRPDQALAMGIAYLSDDRRRDGVVGHLSI 363 E+ LFGL P G + RE CS P QA+A G+AY+ +DR+R G + L I Sbjct: 328 SEVMHALFGLSPEAQGAVWIDGREVKLCS----PAQAIAHGLAYVPEDRQRQGALLSLPI 383 Query: 364 RENIALSSLP------RRLRAGLVDEGEERQVCTSYFRRMGIKADSAEDAVNTLSGGNQQ 417 +NI L LP RR R +D R++C ++ +KA V LSGGNQQ Sbjct: 384 FQNITLPVLPGIGFFLRRHRRREIDIA--RRLC----EQLELKASHFHQHVAQLSGGNQQ 437 Query: 418 KVCLGRVLATLPRLLILDEPTRGIDVGVKQDVLRILDQLSQAGVSVIIVSTDVDELARAA 477 KV L + LAT PR+LILDEPT+GID+G K V R + +L G++VI+VS+++ E+ + Sbjct: 438 KVVLAKWLATQPRVLILDEPTKGIDIGSKAAVHRFIGELVAQGLAVILVSSELPEVMGMS 497 Query: 478 DRICIFQRGRIAHVVS 493 DRI + +GR+ V S Sbjct: 498 DRIVVMHQGRVQQVFS 513 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 263 bits (673), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 169/496 (34%), Positives = 270/496 (54%), Gaps = 16/496 (3%) Query: 15 LRVENLSKRYGAFHALRGITLGIRRGTIHGLLGENGAGKSTLVGLISGQRVPSEGRIFLD 74 L++ + K +G LRG+ L +R G +H LLGENGAGKSTL+ ++ G P G I +D Sbjct: 6 LQLTGIKKNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAGEIRID 65 Query: 75 GEEIQGADVKRMEAAGVFLVPQEPMIIEHMSVMENLMLGLWPAKR-GFVAWRRMRENAAR 133 G+ + + A GV +V QE +I ++ ++N+ L R G++ MR A Sbjct: 66 GQPCRFDSYRAAIAGGVGVVFQEFSLIPYLDAVDNMFLARELRSRWGWLQRAAMRRRAQE 125 Query: 134 MLA--GTGIDAERLAGTLDAVARRKLNILRAMFSGGSIIILDEPTAALTVPDRLQLFAFM 191 ++ G I + L ++ + I +A+ I++LDEPTA LT + LFA M Sbjct: 126 IIGQLGVAIPLDVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPAEVEHLFAVM 185 Query: 192 RQLRASGVTFIFISHFNDEILDICDAVSVLRDGELVATCEEVCSLSSSQLSEFVLGRELD 251 R LRA GV IFISH +EI +ICD ++VLRDG VATC + ++L E ++GR ++ Sbjct: 186 RSLRAQGVAIIFISHHLEEIFEICDRITVLRDGAYVATCA-TAEVDQARLVEMMVGRRIE 244 Query: 252 LFQRDRRPAHALVSAEVISLFGVSGLNDDKLC-VDRLELQPGEIIGFTGLPGEGAKELAR 310 + EV+ V L + V + +L+ GEI+GF GL G G E Sbjct: 245 NCFPPKPAKGGEGEGEVV--LEVHALQLRRQAPVSQFQLRRGEILGFAGLVGSGRTETVL 302 Query: 311 GLFGLLPLRSGQISFPREPACSLPQR---PDQALAMGIAYLSDDRRRDGVVGHLSIRENI 367 + G S ++S +P R P QAL GI L + R+ G++ SI N+ Sbjct: 303 AMLGAHAALSCKLSMH-----GVPLRFADPAQALQAGIGLLPESRKEQGLITSFSILHNV 357 Query: 368 ALSSLPRRLRAGL-VDEGEERQVCTSYFRRMGIKADSAEDAVNTLSGGNQQKVCLGRVLA 426 +L++ + GL +D E+Q + +R+ +KA A+ V+TLSGGNQQKV + R + Sbjct: 358 SLNNYGKYRLGGLFLDRRREQQATEAAMQRVRVKAPGAQVRVDTLSGGNQQKVVIARWIN 417 Query: 427 TLPRLLILDEPTRGIDVGVKQDVLRILDQLSQAGVSVIIVSTDVDELARAADRICIFQRG 486 ++LI DEPTRGIDVG K ++ +++ + + G S++++S+++ E+ ADR+C+F+ G Sbjct: 418 HAMKVLIFDEPTRGIDVGAKSEIYQLMREFTAQGYSILMISSELPEVVGMADRVCVFRGG 477 Query: 487 RIAHVVSGDDISTDRL 502 I + G+ ++ + + Sbjct: 478 GIVATLEGEAVNAEEI 493 Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/219 (23%), Positives = 99/219 (45%), Gaps = 7/219 (3%) Query: 287 LELQPGEIIGFTGLPGEGAKELARGLFGLLPLRSGQISFPREPACSLPQRPDQALAMGIA 346 LE++ GE+ G G G L + L G++ +G+I +P R A +G+ Sbjct: 26 LEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAGEIRIDGQPCRFDSYRAAIAGGVGVV 85 Query: 347 YLSDDRRRDGVVGHLSIRENIALSSLPRRLRAGLVDEGEERQVCTSYFRRMGIKADSAED 406 + + ++ +L +N+ L+ R R G + R+ ++G+ A + Sbjct: 86 F-----QEFSLIPYLDAVDNMFLAR-ELRSRWGWLQRAAMRRRAQEIIGQLGV-AIPLDV 138 Query: 407 AVNTLSGGNQQKVCLGRVLATLPRLLILDEPTRGIDVGVKQDVLRILDQLSQAGVSVIIV 466 V LS QQ V + + LA R+L+LDEPT + + + ++ L GV++I + Sbjct: 139 PVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPAEVEHLFAVMRSLRAQGVAIIFI 198 Query: 467 STDVDELARAADRICIFQRGRIAHVVSGDDISTDRLRQL 505 S ++E+ DRI + + G + ++ RL ++ Sbjct: 199 SHHLEEIFEICDRITVLRDGAYVATCATAEVDQARLVEM 237 >gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 253 bits (645), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 158/495 (31%), Positives = 269/495 (54%), Gaps = 12/495 (2%) Query: 15 LRVENLSKRYGAFHALRGITLGIRRGTIHGLLGENGAGKSTLVGLISG--QRVPSEGRIF 72 L ++ + K +G AL GI + IR G GL GENGAGKSTL+ ++SG EG I Sbjct: 6 LEMKGIVKSFGGVRALNGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWEGEIL 65 Query: 73 LDGEEIQGADVKRMEAAGVFLVPQEPMIIEHMSVMENLMLG----LWPAKRGFVAWRRMR 128 DG+ +Q V+ EAAG+ ++ QE M++ +SV EN+ +G L + + A R Sbjct: 66 WDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGRMNYPAMYRRA 125 Query: 129 ENAARMLAGTGIDAERLAGTLDAVARRKLNILRAMFSGGSIIILDEPTAALTVPDRLQLF 188 E R L I+ ++ + I +A+ ++ILDEP+++LT + L Sbjct: 126 EELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASEIGVLL 185 Query: 189 AFMRQLRASGVTFIFISHFNDEILDICDAVSVLRDGELVATCEEVCSLSSSQLSEFVLGR 248 ++ L+A GV ++ISH DE+ ++CD +SV+RDG+ +AT + + ++ ++GR Sbjct: 186 KIIKDLKARGVACVYISHKLDEVAEVCDTISVIRDGKHIATTP-MQEMDVDKIITQMVGR 244 Query: 249 ELDLFQRDRRPA--HALVSAEVISLFGVSGLNDDKLCVDRLELQPGEIIGFTGLPGEGAK 306 E+ +R A ++ A I+ + + ++ ++ GEI+G GL G G Sbjct: 245 EITAMYPERNHAIGEVVLEARNITCYDIDNPRRKRVDDVSFSVRRGEILGIAGLVGAGRT 304 Query: 307 ELARGLFGLLPLR-SGQISFPREPACSLPQRPDQALAMGIAYLSDDRRRDGVVGHLSIRE 365 EL +FG R GQ+ +PA + P +++ G+ + +DR+ G+V L + + Sbjct: 305 ELVSAIFGAYRGRYEGQVLLEGKPADT--SSPLKSIRRGLCMVPEDRKHHGIVPDLDVGQ 362 Query: 366 NIALSSLPRRLRAGLVDEGEERQVCTSYFRRMGIKADSAEDAVNTLSGGNQQKVCLGRVL 425 NI L+ L R R +D E + RM +K + + +LSGGNQQK L ++L Sbjct: 363 NITLTVLNRFSRGSRIDGSAELKTIQDEIGRMRVKTATPFLPITSLSGGNQQKAVLAKML 422 Query: 426 ATLPRLLILDEPTRGIDVGVKQDVLRILDQLSQAGVSVIIVSTDVDELARAADRICIFQR 485 P++LILDEPTRG+DVG K ++ R++ +L++AG+++I+VS+++ E+ +DR+ + Sbjct: 423 LAQPKVLILDEPTRGVDVGAKAEIYRLISELAKAGLAIIMVSSELAEVLGVSDRVLVIGE 482 Query: 486 GRIAHVVSGDDISTD 500 GR+ D++S + Sbjct: 483 GRLRGDFVNDNLSQE 497 Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 19/240 (7%) Query: 268 VISLFGVSGLNDDKLCVDRLELQPGEIIGFTGLPGEGAKELARGLFGLLP--LRSGQISF 325 V S GV LN +D ++++PGE +G G G G L + L G+ P G+I + Sbjct: 12 VKSFGGVRALNG----ID-IKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWEGEILW 66 Query: 326 PREPACSLPQRPDQALAMGIAYLSDDRRRDGVVGHLSIRENIALS---SLPRRLRAGLVD 382 +P + R +A + I + + +V LS+ ENI + +LP G ++ Sbjct: 67 DGKPLQAHSVRDTEAAGIVIIH-----QELMLVPELSVAENIFMGHEITLP----GGRMN 117 Query: 383 EGEERQVCTSYFRRMGIKADSAEDAVNTLSGGNQQKVCLGRVLATLPRLLILDEPTRGID 442 + R + + + V+ GG+QQ V + + L RLLILDEP+ + Sbjct: 118 YPAMYRRAEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLT 177 Query: 443 VGVKQDVLRILDQLSQAGVSVIIVSTDVDELARAADRICIFQRGRIAHVVSGDDISTDRL 502 +L+I+ L GV+ + +S +DE+A D I + + G+ ++ D++ Sbjct: 178 ASEIGVLLKIIKDLKARGVACVYISHKLDEVAEVCDTISVIRDGKHIATTPMQEMDVDKI 237 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.139 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,602,521 Number of extensions: 73000 Number of successful extensions: 886 Number of sequences better than 1.0e-08: 125 Number of HSP's gapped: 587 Number of HSP's successfully gapped: 211 Length of query: 507 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 418 Effective length of database: 1,198,455 Effective search space: 500954190 Effective search space used: 500954190 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)