BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2500.p (240 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311599|ref|YP_003775691.1| transcription regulator protein... 447 e-127 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 85 5e-18 gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 80 1e-16 gi|300310738|ref|YP_003774830.1| transcription regulator protein... 74 9e-15 gi|300314040|ref|YP_003778132.1| transcription regulator protein... 73 2e-14 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 447 bits (1149), Expect = e-127, Method: Compositional matrix adjust. Identities = 223/240 (92%), Positives = 229/240 (95%) Query: 1 MSELLALSGAEREGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAI 60 MSEL++L G +REGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAI Sbjct: 1 MSELISLPGNDREGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAI 60 Query: 61 HRLEGQNLLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRV 120 HRLEGQNLLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRV Sbjct: 61 HRLEGQNLLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRV 120 Query: 121 LDTHEKDEAFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSAT 180 LDTHEKDEAFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSAT Sbjct: 121 LDTHEKDEAFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSAT 180 Query: 181 PNRPRQAFAEHHRILDALADGDGELADLLMRRHIGASRRNIEHQIAHGAPGAPDQQRDQA 240 P+RPRQAFAEHHRILDALADGDGELADLLMRRHIGASRRNIEHQIA G ++ QA Sbjct: 181 PHRPRQAFAEHHRILDALADGDGELADLLMRRHIGASRRNIEHQIAQAQAGGAGKRAGQA 240 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 85.1 bits (209), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 17/207 (8%) Query: 15 ETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPH 74 +T +E + I+ I +++PG + E LA +G+SR P+REA+ +L ++ P Sbjct: 5 KTRAEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPR 64 Query: 75 VGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTHEKDEAFQAGR 134 GA V + + L+E+F++ E M RLAA+RM+ AE EL L H +A QA R Sbjct: 65 RGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAEL---LAAH---QACQAAR 118 Query: 135 G-------YYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPNRPRQA 187 +Y E FH I S N L L++ R YR +R + + Sbjct: 119 DANDPDAYFYLNEA---FHDHIYAGSHNGFLAD-QARALHRRLRPYRRLQLRVRDRLKSS 174 Query: 188 FAEHHRILDALADGDGELADLLMRRHI 214 F EH ++DA+ GD E L+R HI Sbjct: 175 FDEHQAVVDAIISGDAEKTVDLLREHI 201 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 80.1 bits (196), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 106/227 (46%), Gaps = 24/227 (10%) Query: 12 REGETLSEHVFRKIQSAIVQGEIAPGSKI-SEPELARTYGISRGPLREAIHRLEGQNLLV 70 R+ ++LS+ V + + I G + PG K+ +E E+ +T G+SR +REAI RL+ L+ Sbjct: 15 RKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVE 74 Query: 71 RVPHVGARVVS--------------LTLEGLVELFQIRESLEGMACRLAAQRMSRAELDE 116 +G V+ T+ L+ L ++R SLE LAA R + +L E Sbjct: 75 TRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAARRTEEQLQE 134 Query: 117 LRRVLDTHEKDEAFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQ 176 +R LD A Q G G D+ FH+ I A+GN+ I+ + RI Sbjct: 135 IREALDLF---RANQQGGGDTVGP-DFRFHFAIANATGNRYFIEIISHLGMGVIPRKRIN 190 Query: 177 YSATPNRPRQAFA-----EHHRILDALADGDGELADLLMRRHIGASR 218 + + + ++ EH I +A+A GD E A MR H+ SR Sbjct: 191 TAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSR 237 >gi|300310738|ref|YP_003774830.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 74.3 bits (181), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 13/213 (6%) Query: 14 GETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVP 73 L+E V+ +++ I + PG +E E+A+ G+SR PLR+A+ RL+ + L Sbjct: 6 ANALAEQVYHRLKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGF 65 Query: 74 HVGARVVSLTLEGLVELFQIRESLEGMAC-RLAAQRMSRAELDELRRVL----DTHEKDE 128 G +V + + L L+ +R LE A +L +Q + AEL +L + D + D Sbjct: 66 RRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDARQTDA 125 Query: 129 AFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPNRPRQAF 188 A + D FH ++ A+GN+ +TR+ E+ + R+ R R + Sbjct: 126 VKVA-------QLDEAFHTNLVAAAGNEEMTRV-HTEVTEKIRIVRRLDFLKKKRIDATY 177 Query: 189 AEHHRILDALADGDGELADLLMRRHIGASRRNI 221 EH +IL +A A +L+R HI S+ + Sbjct: 178 EEHGKILQLIAKRKATEAQILLRAHITQSKLEV 210 >gi|300314040|ref|YP_003778132.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 73.2 bits (178), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 89/204 (43%), Gaps = 10/204 (4%) Query: 17 LSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVG 76 L E V+ I AI G +AP KI++ LA G+SR P+ +A L+ + + G Sbjct: 10 LIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREGFIEDAGRKG 69 Query: 77 ARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTHEKDEAFQAGRGY 136 V +L + L++L+Q+R L+G+A R A++ D R +AGR Sbjct: 70 VMVTALDPQRLMQLYQVRAVLDGLAARSTAEQWKS---DAALRAAGERAGRALIEAGRAL 126 Query: 137 YQQE-------GDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPNRPRQAFA 189 D DFH I ++ GN ++ + + R S+ + Sbjct: 127 ADMRDLSARILADMDFHQFIYRSCGNPMIGQTTALHWQHIRRAMGAILSSEVRSHLAVWE 186 Query: 190 EHHRILDALADGDGELADLLMRRH 213 EH IL A+ +G LAD L R+H Sbjct: 187 EHEAILQAMLEGRPALADKLARQH 210 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 697,515 Number of extensions: 25407 Number of successful extensions: 126 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 107 Number of HSP's successfully gapped: 18 Length of query: 240 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 157 Effective length of database: 1,226,865 Effective search space: 192617805 Effective search space used: 192617805 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)