BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2497.p (221 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311602|ref|YP_003775694.1| glutamine ABC transporter perme... 360 e-101 gi|300309410|ref|YP_003773502.1| glutamine ABC transporter perme... 150 1e-37 gi|300312809|ref|YP_003776901.1| glutamine ABC transporter perme... 148 4e-37 gi|300313889|ref|YP_003777981.1| amino acid ABC transporter perm... 148 4e-37 gi|300310495|ref|YP_003774587.1| amino acid ABC transporter perm... 147 6e-37 >gi|300311602|ref|YP_003775694.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 360 bits (925), Expect = e-101, Method: Compositional matrix adjust. Identities = 203/221 (91%), Positives = 218/221 (98%) Query: 1 MKLDFSGVWDSWSSLLHGTMVTVEITAASLVLGCVLGLLIGLGRLNPQRRLIYGLCTFYL 60 MKLDFSGVW+SW SL+HGT+VTVEITAASLV+GCVLGLL+GLGRL+PQRR+IYGLCT YL Sbjct: 1 MKLDFSGVWESWPSLVHGTLVTVEITAASLVVGCVLGLLVGLGRLSPQRRVIYGLCTIYL 60 Query: 61 TLVRGTPLLVQLFLWFFGLPHVGLILPAFVCGILGLGIYSGAYISEIVRGSIQSIERGQM 120 TLVRGTPLLVQLFLWFFGLPHVG+ILPA+VCGILGLGIYSGAY+SEIVRG+IQSIERGQM Sbjct: 61 TLVRGTPLLVQLFLWFFGLPHVGVILPAYVCGILGLGIYSGAYVSEIVRGAIQSIERGQM 120 Query: 121 EAARSLGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEKII 180 EAARSLGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEKII Sbjct: 121 EAARSLGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEKII 180 Query: 181 SITYRSLETYLVIALIYLVLTTVTTLILRRIEKVLRSEGRV 221 S+TYRSLETYL IALIYL+LT+VTTLILRR+EKVLRSEGRV Sbjct: 181 SVTYRSLETYLAIALIYLLLTSVTTLILRRVEKVLRSEGRV 221 >gi|300309410|ref|YP_003773502.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 150 bits (378), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 129/225 (57%), Gaps = 27/225 (12%) Query: 15 LLHGTMVTVEITAASLVLGCVLGLLIGLGRLNPQRR--LIYGLC-------TFYLTLVRG 65 + GT +T++ ++ G GL++G+GRL R Y LC FY++ +RG Sbjct: 17 FVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLCYCVQWPIRFYVSFLRG 76 Query: 66 TPLLVQLFLWFFGL------PHVGLILP------------AFVCGILGLGIYSGAYISEI 107 TPL VQ+ L F L P GLIL AF +L + + SGAY+SEI Sbjct: 77 TPLFVQILLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFASAVLAITLNSGAYVSEI 136 Query: 108 VRGSIQSIERGQMEAARSLGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLL 167 R IQSI+RGQ EA+RSLG+ Y +RRV+LPQAF RM+PPLGN IA++K+S+L S + Sbjct: 137 FRAGIQSIDRGQSEASRSLGMSYLATLRRVVLPQAFRRMLPPLGNNAIAIVKDSSLASAI 196 Query: 168 TIADLMHEGEKIISITYRSLETYLVIALIYLVLTTVTTLILRRIE 212 +A+L + + R E YL I++IY ++T + ++R +E Sbjct: 197 GLAELAYAARTVSGAYARYWEPYLTISVIYWLITLALSALVRHLE 241 >gi|300312809|ref|YP_003776901.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 218 Score = 148 bits (373), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 87/217 (40%), Positives = 133/217 (61%), Gaps = 2/217 (0%) Query: 1 MKLDFSGVWDSWSSLLHGTMVTVEITAASLVLGCVLGLLIGLGRLNPQRRLIYGLCTFYL 60 M DFS + DS +LL G VTV ITAA LV G ++GLL GL R L+ G+ Y+ Sbjct: 1 MDFDFSVITDSLPALLEGAKVTVLITAAGLVGGTLVGLLAGLMRAY-GNTLLKGIGFGYV 59 Query: 61 TLVRGTPLLVQLFLWFFGLPHV-GLILPAFVCGILGLGIYSGAYISEIVRGSIQSIERGQ 119 VRGTP++VQ+ +F LP + G+ + + + + SGAYI+EIVRG+ S+ RG Sbjct: 60 EFVRGTPIVVQVMFIYFALPVLLGIRVDPMTAAVTSIVVNSGAYIAEIVRGAFLSVPRGL 119 Query: 120 MEAARSLGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEKI 179 EA +LGLP + VI P A RM+P +GN+FI +K+++L ++ + +L +G++I Sbjct: 120 REAGLALGLPVWRVLAFVIGPVAIRRMVPAMGNQFIVSLKDTSLFIVIGVGELTRQGQEI 179 Query: 180 ISITYRSLETYLVIALIYLVLTTVTTLILRRIEKVLR 216 ++ +R++E ++ +A IYL + V T LR EK +R Sbjct: 180 MAANFRAVEIWIAVAAIYLCMIGVMTYALRTFEKRMR 216 >gi|300313889|ref|YP_003777981.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 148 bits (373), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 125/206 (60%), Gaps = 1/206 (0%) Query: 2 KLDFSGVWDSWSSLLHGTMVTVEITAASLVLGCVLGLLIGLGRLNPQRRLIYGLCTFYLT 61 LDFS + W LHG +T+++T ++++G +G+ + + +P R L G C+ Y+ Sbjct: 4 SLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARG-CSAYIE 62 Query: 62 LVRGTPLLVQLFLWFFGLPHVGLILPAFVCGILGLGIYSGAYISEIVRGSIQSIERGQME 121 +VR TP LVQ+FL +FGL +G+ +P F +L + I AY +EI+R + S+ RGQ+E Sbjct: 63 VVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQIE 122 Query: 122 AARSLGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEKIIS 181 AA+ LGL V+L A R+ P L ++F+ +++ SA+ S ++ +L + S Sbjct: 123 AAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTVQS 182 Query: 182 ITYRSLETYLVIALIYLVLTTVTTLI 207 T+RSLETYLV+A +YLVL + L+ Sbjct: 183 DTFRSLETYLVVAALYLVLAILVKLV 208 >gi|300310495|ref|YP_003774587.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 218 Score = 147 bits (372), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 83/215 (38%), Positives = 139/215 (64%), Gaps = 2/215 (0%) Query: 6 SGVWDSWSSLLHGTMVTVEITAASLVLGCVLGLLIGLGRLNPQRRLIYGLCTFYLTLVRG 65 V D LL G +VTVE+T S +L V+GLL+ L +++ + + T + ++RG Sbjct: 4 QNVLDFLPILLKGALVTVEVTIYSFLLSSVIGLLLALMKVSRLKPVALAGATI-VNIIRG 62 Query: 66 TPLLVQLFLWFFGLPHVGLILPAFVCGILGLGIYSGAYISEIVRGSIQSIERGQMEAARS 125 P++VQLF +F LP +G+ L AF G++GLGI AY +E R I++++ GQ+EAA+S Sbjct: 63 LPIIVQLFYIYFVLPDIGIQLSAFQAGVVGLGIAYSAYQAENFRAGIEAVDMGQIEAAQS 122 Query: 126 LGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEKIISITYR 185 +G+ + MRRV+LPQAF +PP GN + ++K+S+LVS +T+ ++ G+ I S T++ Sbjct: 123 IGMRGPLIMRRVVLPQAFRIALPPYGNTLVMMLKDSSLVSTITVLEMTRAGQMIASSTFQ 182 Query: 186 SLETYLVIALIYLVLTTVTTLILRRIEKVLRSEGR 220 ++ Y +A++YL+L+ ++RR+E + S+GR Sbjct: 183 NMTVYTTVAVLYLLLSLPLVFLIRRLE-IRNSKGR 216 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.145 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 549,766 Number of extensions: 20015 Number of successful extensions: 144 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 19 Length of query: 221 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 139 Effective length of database: 1,231,600 Effective search space: 171192400 Effective search space used: 171192400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)