BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2496.p (257 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPas... 422 e-119 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 291 3e-80 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 278 4e-76 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 270 8e-74 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 268 4e-73 >gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 422 bits (1085), Expect = e-119, Method: Compositional matrix adjust. Identities = 214/256 (83%), Positives = 234/256 (91%) Query: 1 MQQPIVEVKGLQKSFGQHLVLKGIDFAVAPSQVVVIIGPSGSGKSTFLRCLNGLETAEGG 60 M +PIVEV GL+KSFG H+VLK +D +VAPSQVVV+IGPSGSGKSTFLRCLNGLE AEGG Sbjct: 1 MTEPIVEVSGLRKSFGAHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGG 60 Query: 61 TVMVCGHAVVQSGRMMPESNLDALRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGVPRK 120 TV VCG VV+ GRMMPE+ LD LRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRG+ RK Sbjct: 61 TVKVCGRPVVEGGRMMPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMSRK 120 Query: 121 EAQEHGLRLLKKVGLEHKAKDYPGTLSGGQKQRVAIARALAMEPKVMLFDEPTSALDPEL 180 AQ+ L+LL+KVGL HKAK YPGTLSGGQKQRVAIARALAMEP+VMLFDEPTSALDPEL Sbjct: 121 AAQQQALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSALDPEL 180 Query: 181 VGEVLQVMQDLAAEGMTMLIVTHEMGFAREVADVVVVMDHGSIVESGPPSAIFTDPREAR 240 VGEVLQV++ LAAEGMTM+IVTHEMGFAREVADVVVVMDHGSIVE+GPP AIFT P++AR Sbjct: 181 VGEVLQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTAPQQAR 240 Query: 241 TRSFLQTMLAREVAHG 256 TRSFLQTMLAR+VA G Sbjct: 241 TRSFLQTMLARQVADG 256 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 291 bits (745), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 146/245 (59%), Positives = 182/245 (74%), Gaps = 5/245 (2%) Query: 5 IVEVKGLQKSFGQHLVLKGIDFAVAPSQVVVIIGPSGSGKSTFLRCLNGLETAEGGTVMV 64 +++V LQK FGQ +L+GID + +VV +IGPSGSGKSTFLRCLNGLE G + + Sbjct: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 Query: 65 CGHAVVQSGRMMPESNLDALRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGVPRKEAQE 124 G + P+ NL+ALRAE+GMVFQ FNLFPH+TVL+N+ +AP ++ + R+EA Sbjct: 61 EGVKLND-----PKVNLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKLSRREAVL 115 Query: 125 HGLRLLKKVGLEHKAKDYPGTLSGGQKQRVAIARALAMEPKVMLFDEPTSALDPELVGEV 184 +LL+KVGL K +P LSGGQ+QRVAIARALAMEPKVMLFDEPTSALDPELVGEV Sbjct: 116 VAEKLLQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEV 175 Query: 185 LQVMQDLAAEGMTMLIVTHEMGFAREVADVVVVMDHGSIVESGPPSAIFTDPREARTRSF 244 L VM+ LA EGMTM++VTHEMGFAREV+D V+ +D G I+E GPP + DP RTR F Sbjct: 176 LTVMKQLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGDPHHERTRDF 235 Query: 245 LQTML 249 L+ +L Sbjct: 236 LRKVL 240 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 278 bits (710), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 137/247 (55%), Positives = 180/247 (72%), Gaps = 5/247 (2%) Query: 5 IVEVKGLQKSFGQHLVLKGIDFAVAPSQVVVIIGPSGSGKSTFLRCLNGLETAEGGTVMV 64 ++EVK + K FG+H VLK + +VA +VV +IGPSGSGKST LRC+NGLE+ E G +++ Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 65 CGHAVVQSGRMMPESNLDALRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGVPRKEAQE 124 G V + G ++ LR VGMVFQ FNLFPH TVL+N+T P + G+ R +A+ Sbjct: 61 DGQRVDRDG-----PDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQARS 115 Query: 125 HGLRLLKKVGLEHKAKDYPGTLSGGQKQRVAIARALAMEPKVMLFDEPTSALDPELVGEV 184 + LL KVGL + YP LSGGQ+QRVAIAR+LAM+P+ +LFDEPTSALDPELVGEV Sbjct: 116 EAMSLLDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEV 175 Query: 185 LQVMQDLAAEGMTMLIVTHEMGFAREVADVVVVMDHGSIVESGPPSAIFTDPREARTRSF 244 L VM+ LAA+GMTM++VTHEMGFAREVAD V + GSIVESG + + +P+ ART+ F Sbjct: 176 LAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDF 235 Query: 245 LQTMLAR 251 L+ ++ + Sbjct: 236 LRRVIGK 242 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 270 bits (690), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 134/242 (55%), Positives = 169/242 (69%), Gaps = 5/242 (2%) Query: 4 PIVEVKGLQKSFGQHLVLKGIDFAVAPSQVVVIIGPSGSGKSTFLRCLNGLETAEGGTVM 63 PIVE+ + K FG + VL GI +V QVV IIG SGSGKST LRC+NGLET +GG++ Sbjct: 2 PIVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSIT 61 Query: 64 VCGHAVVQSGRMMPESNLDALRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGVPRKEAQ 123 V GH + +L LR +VGMVFQ +NLFPHLTV +NI L+P ++ + A+ Sbjct: 62 VAGHKLTHK-----HEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETAR 116 Query: 124 EHGLRLLKKVGLEHKAKDYPGTLSGGQKQRVAIARALAMEPKVMLFDEPTSALDPELVGE 183 E +++LK+VGL+HK YP LSGGQ+QRVAIAR+LAMEP+VMLFDE TSALDPEL E Sbjct: 117 ETAIKVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAE 176 Query: 184 VLQVMQDLAAEGMTMLIVTHEMGFAREVADVVVVMDHGSIVESGPPSAIFTDPREARTRS 243 VL+VM++LA GMTML+VTHEM FAR VAD+ V M G + E+ P F DP+ R Sbjct: 177 VLKVMEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQ 236 Query: 244 FL 245 F+ Sbjct: 237 FI 238 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 268 bits (684), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 134/245 (54%), Positives = 174/245 (71%), Gaps = 4/245 (1%) Query: 5 IVEVKGLQKSFGQHLVLKGIDFAVAPSQVVVIIGPSGSGKSTFLRCLNGLETAEGGTVMV 64 IV++K L KSFG + VL G+ V Q+V IIG SGSGKST LRCLNGLE + G + V Sbjct: 4 IVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIQV 63 Query: 65 CGHAVVQSGRMMPESNLDALRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGVPRKEAQE 124 CGH + ++ NL LR +VG+VFQS+NLFPHLTV NITLA T ++ + ++A+ Sbjct: 64 CGHDIHHPDKL----NLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKT 119 Query: 125 HGLRLLKKVGLEHKAKDYPGTLSGGQKQRVAIARALAMEPKVMLFDEPTSALDPELVGEV 184 ++L+ VGLE+K YP LSGGQ QRVAIAR+LAM P++MLFDE TSALDPEL EV Sbjct: 120 IAHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEV 179 Query: 185 LQVMQDLAAEGMTMLIVTHEMGFAREVADVVVVMDHGSIVESGPPSAIFTDPREARTRSF 244 L+VM+DLA GMTM++VTHEM FAR++ADV+V M G + E GPP +F+ P+ A + F Sbjct: 180 LKVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQKF 239 Query: 245 LQTML 249 + + L Sbjct: 240 VSSDL 244 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 811,762 Number of extensions: 33324 Number of successful extensions: 588 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 319 Number of HSP's successfully gapped: 148 Length of query: 257 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 174 Effective length of database: 1,226,865 Effective search space: 213474510 Effective search space used: 213474510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)