BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2492.p
         (145 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311605|ref|YP_003775697.1| universal stress protein [Herba...   265   1e-72
gi|300313176|ref|YP_003777268.1| universal stress protein [Herba...   119   1e-28
gi|300311715|ref|YP_003775807.1| universal stress protein [Herba...   114   2e-27

>gi|300311605|ref|YP_003775697.1| universal stress protein
           [Herbaspirillum seropedicae SmR1]
          Length = 145

 Score =  265 bits (676), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/145 (90%), Positives = 137/145 (94%)

Query: 1   MFKNILLATDGSRLCNESVKAAIALAKSCGSKLVGLSVAGNLRALSIPEISVGVDVERTD 60
           MFKNILLATDGSRLCNESVKAAIALAKSCGS LVGLSV+GNLRALSIPE+SVGVDV R  
Sbjct: 1   MFKNILLATDGSRLCNESVKAAIALAKSCGSSLVGLSVSGNLRALSIPEVSVGVDVARAG 60

Query: 61  EAGRARALASVEMITAMAREEGVPCTVQVAQGGRPYEEIMRVAELEHCDAIIMASKARST 120
           EAGRARALASVEMIT MAR+EGVPC+VQVAQGGRPYEEIMRVAE EHCDAI MASKARST
Sbjct: 61  EAGRARALASVEMITEMARQEGVPCSVQVAQGGRPYEEIMRVAEREHCDAIFMASKARST 120

Query: 121 LGRLLLGSQTQKLLAHSKVPVLVYR 145
           LGRLL+GSQTQKLLA SKVPVLV+R
Sbjct: 121 LGRLLMGSQTQKLLARSKVPVLVFR 145


>gi|300313176|ref|YP_003777268.1| universal stress protein
           [Herbaspirillum seropedicae SmR1]
          Length = 145

 Score =  119 bits (298), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 88/145 (60%)

Query: 1   MFKNILLATDGSRLCNESVKAAIALAKSCGSKLVGLSVAGNLRALSIPEISVGVDVERTD 60
           MFK IL+ TDGS   ++++  A+  AK+ G++L+G++VA       + E S+ +D    +
Sbjct: 1   MFKTILVPTDGSERSDKAIATAVDYAKNSGARLIGITVAEPYPFSPLAESSMAIDPALYE 60

Query: 61  EAGRARALASVEMITAMAREEGVPCTVQVAQGGRPYEEIMRVAELEHCDAIIMASKARST 120
           E  +  A   ++ IT  A   GVPC  ++     P EEI++ A+L  CDAI MAS  RS 
Sbjct: 61  ENVKTLAQQHIKKITDAATAAGVPCQTEIVMSFNPDEEIIKAAQLHACDAIFMASHGRSG 120

Query: 121 LGRLLLGSQTQKLLAHSKVPVLVYR 145
           L R+ LGS+TQK+L HS +PVLV R
Sbjct: 121 LSRIFLGSKTQKVLTHSTIPVLVLR 145


>gi|300311715|ref|YP_003775807.1| universal stress protein
           [Herbaspirillum seropedicae SmR1]
          Length = 157

 Score =  114 bits (286), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 88/145 (60%), Gaps = 1/145 (0%)

Query: 1   MFKNILLATDGSRLCNESVKAAIALAKSCGSKLVGLSVAGNLRALSIPEISVGVDVERTD 60
           +FK IL+ TDGS     +V+AA+  AK  GS LVGLSVA ++   ++ +    ++  + +
Sbjct: 14  IFKKILVPTDGSDASERAVQAAVQFAKESGSSLVGLSVAEDIVQWAVID-GTAINYLQVE 72

Query: 61  EAGRARALASVEMITAMAREEGVPCTVQVAQGGRPYEEIMRVAELEHCDAIIMASKARST 120
                 A ++V  + A+A+   VPC     +   PYEEI+  A  +HCDAI MAS  R  
Sbjct: 73  NEILENAKSNVARLAALAKSADVPCETFTVKAVHPYEEILAHASHQHCDAIFMASHGRKG 132

Query: 121 LGRLLLGSQTQKLLAHSKVPVLVYR 145
           L R +LGSQTQK+LA++ +PVLV+R
Sbjct: 133 LERFILGSQTQKVLANATIPVLVFR 157


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 382,870
Number of extensions: 13159
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 3
Length of query: 145
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,255,275
Effective search space: 85358700
Effective search space used: 85358700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)