BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2490.p
         (308 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313905|ref|YP_003777997.1| hypothetical protein Hsero_4623...    92   4e-20

>gi|300313905|ref|YP_003777997.1| hypothetical protein Hsero_4623
           [Herbaspirillum seropedicae SmR1]
          Length = 265

 Score = 92.4 bits (228), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 11/238 (4%)

Query: 34  CDQTLELSAAQKNRLLLLAATVRDELQRSGEGSAIISRSAINLDRFQIRYSHAGLAIRND 93
           C+QT+  + A + +L +   TV + L  SG    II R   +L ++Q RYSH  +A R++
Sbjct: 33  CEQTIPEATAVRAQLDMAVKTV-ERLNASGADVVIIGRIGQDLSKYQQRYSHLAIAYRDE 91

Query: 94  SNQSSSWRVRQLFYQCEKDKPDIFDQGIAGFLLDNDSASMAYVSLVFVPGTLGLEMRRAA 153
                 W V     +C     ++++QG+  F +D+     AYV+   VP     E  RAA
Sbjct: 92  QQ----WYVVHKLNECGTAVSNLYEQGMGQFFMDSPFLLEAYVA---VPPPEVQEKLRAA 144

Query: 154 LDDTLSSHLLGQHYSANAYPFSTQFQNCNQWLMEMLAFAWGQLSLKDDVRAAAQQWLRQS 213
           +     + +    YS  AYP+++++Q  NQW+ E LA A   L  +   R  AQ WLR  
Sbjct: 145 IVRPQVTRMHEPQYSMLAYPWASRYQQSNQWITETLALA---LEPQISNREQAQAWLRFK 201

Query: 214 DYRPTDIEVQHDYLMWASHFIPLLHDEDHPAVNLEKNLYQVTMPASIESFIHRRDPES 271
            Y P  + +     +    F   +  +DHP      +  + T   S+ +F+ R   E+
Sbjct: 202 GYAPDTLHLGPMTRLGGRMFKANIAFDDHPNALRFSDRIETTTADSVFTFLRRSGLEA 259


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 936,012
Number of extensions: 36009
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,217,395
Effective search space: 271479085
Effective search space used: 271479085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)