BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2489.p
         (398 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311606|ref|YP_003775698.1| Na+/H+ antiporter protein [Herb...   677   0.0  

>gi|300311606|ref|YP_003775698.1| Na+/H+ antiporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 397

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/393 (89%), Positives = 374/393 (95%)

Query: 1   LTKTPHQAQGGNAFTRFFAHEAAGGIVLAIAAVLALVVSNSGWRQAYEGFTRIQGTVDIG 60
           ++++PH  QGGNAF RFFAHEAAGGIVLAIAAVLALV+SNSGWR+AY  FTRIQGTVDIG
Sbjct: 1   MSQSPHPIQGGNAFARFFAHEAAGGIVLAIAAVLALVISNSGWREAYAAFTRIQGTVDIG 60

Query: 61  GLIVLSKPLLLWVNDLWMAVFFFLVGLEIKREFVEGELASRKQAILPAAAALGGMLVPAG 120
           GL+VLSKPLLLWVNDLWMAVFFFLVGLEIKREFVEGELASRKQAILPAAAALGGM+VPA 
Sbjct: 61  GLVVLSKPLLLWVNDLWMAVFFFLVGLEIKREFVEGELASRKQAILPAAAALGGMVVPAA 120

Query: 121 IYALINLGDPVALRGWAIPAATDIAFAIGIVMLLGSRVPTSLKVFLTAVAIIDDLGAIVV 180
           IYALINLGDPVALRGWAIPAATDIAFAIGIVMLLGSRVPTSLKVFLTAVAIIDDLGAIVV
Sbjct: 121 IYALINLGDPVALRGWAIPAATDIAFAIGIVMLLGSRVPTSLKVFLTAVAIIDDLGAIVV 180

Query: 181 IALFYTDHLSLAMLGAAGVGTLLLLLFNRSGVRRADVYILVGLVVWICVLKSGIHATLAG 240
           IALFYTD+LSL ML  AG+G+L+LLL NRSGVRRADVYILVGLV+W+CVLKSGIHATLAG
Sbjct: 181 IALFYTDNLSLGMLAGAGLGSLVLLLLNRSGVRRADVYILVGLVIWVCVLKSGIHATLAG 240

Query: 241 VVTALAIPMRDKEGEPLAGALEHGLHPWVAFLVLPMFAFANAGVSLQGMSLSNLFEAIPL 300
           VVTALAIPMRD   +PLAGALEHGLHPWVAFLVLPMFAFANAGVSLQGMSL +L E IPL
Sbjct: 241 VVTALAIPMRDAHDQPLAGALEHGLHPWVAFLVLPMFAFANAGVSLQGMSLGSLLEPIPL 300

Query: 301 GIAAGLVLGKTVGVFGAAWLMIRSGLAAAPSGASTRQFIGVCMLCGIGFTMSLFIGGLAF 360
           GIAAGLVLGKTVGVFGAAWLM+RSGLA AP+GA+TRQFIGVCMLCGIGFTMSLFIGGLAF
Sbjct: 301 GIAAGLVLGKTVGVFGAAWLMVRSGLATAPAGATTRQFIGVCMLCGIGFTMSLFIGGLAF 360

Query: 361 QGLSPDFEAKLKLGVLGGSILAGLLGTLVLCRK 393
           QGL+ DFEAKLKLGVLGGS++AGLLGTLVL RK
Sbjct: 361 QGLAADFEAKLKLGVLGGSVIAGLLGTLVLWRK 393


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.143    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,253,060
Number of extensions: 55486
Number of successful extensions: 291
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 311
Effective length of database: 1,207,925
Effective search space: 375664675
Effective search space used: 375664675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)