BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2481.p (583 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 883 0.0 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 474 e-135 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 466 e-132 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 427 e-121 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 416 e-117 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust. Identities = 473/583 (81%), Positives = 513/583 (87%), Gaps = 2/583 (0%) Query: 1 MFAYFGNLKVAVRLAAVFALIVGLLAVVSITAFVKINNINRSIDQIINDRYLKVRWAFDM 60 MFAYF NLKVAVRLAAVFA IV LLAVVS+TAF+KINNINR+IDQI+NDRYLKVRWAFD+ Sbjct: 1 MFAYFKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDL 60 Query: 61 RDGINEQIKYLRGMAIDINNAAGNEKRFGQMEVAVKQTKEALDKIAARQVTAVGQKKIKA 120 RDG+NEQIKYLRG+AIDI N NEKRF Q+EVAVKQTKEALDKI ARQVTAVGQKK KA Sbjct: 61 RDGVNEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKA 120 Query: 121 VDEARQVFDTSRAELMALIRAGKGDAANEYVLRKITDAQNKYLDLARAFADSQSSQLSAE 180 +DEAR FD S+A+ +AL++AG +A+EYVLRKITD QN YL LARAFADSQ +QL AE Sbjct: 121 LDEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAE 180 Query: 181 GAKAVEDGAMAIEVTLACSAVAVLASIILGYLMARSIVKPLTEAVRVAENVASGDLTTRI 240 GAKAV DGAMAIEVTLACS AVLA+IILGYLMARSIVKPLTEAVRVAENVA+GDLTTRI Sbjct: 181 GAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRI 240 Query: 241 VPHSKDETGQLMQALRKMNDNLVNIVSGVRRGTDSIATASGEIASGNLDLSARTEQQAGS 300 PHS+DETGQLMQALRKMNDNL+ IVSGVRRGT+SI TASGEIASGNLDLSARTEQQAGS Sbjct: 241 EPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGS 300 Query: 301 LEETASAMEEMTSTVRQNADNARQANQMAASASQIALQGGEIVGRVVSTMEEINQSSRKI 360 LEETASAMEEMTSTVRQNADNARQANQMA SAS+IALQGG+IVGRVV TM+EINQSSRKI Sbjct: 301 LEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKI 360 Query: 361 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI 420 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI Sbjct: 361 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI 420 Query: 421 DDSVAKVEGGSHLVAEAGTTMEQVVNSVRNVTDIVAEISAASAEQSSGIEEINRAVTQMD 480 DSV KVEGGS LVA+AG TMEQVV+SVR+VTDIVAEISAASAEQSSGIEEINRAVTQMD Sbjct: 421 ADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMD 480 Query: 481 EGTQQNAALVEQSAAAAKAMQEQAADLAKAISIFKLAEAEMKKTSAPAMVQPQPQPQPIR 540 EGTQQNAALVEQ+AAAAK+MQEQA L ++ISIFKL + +AP V+ P Sbjct: 481 EGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASIPAAP--VRTALAPAAPA 538 Query: 541 KPATTMPKARTVTAPARPIVSAPATAPALKAPSRIDDDAWETF 583 A+ P AR +PA A APALKAP+R+D+DAWETF Sbjct: 539 PTASRAPTARPRVSPAITAAPTVAAAPALKAPARVDEDAWETF 581 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 474 bits (1221), Expect = e-135, Method: Compositional matrix adjust. Identities = 296/590 (50%), Positives = 386/590 (65%), Gaps = 28/590 (4%) Query: 5 FGNLKVAVRLAAVFALIVGLLAVVSITAFVKINNINRSIDQIINDRYLKVRWAFDMRDGI 64 ++K++VRL A FA ++ ++ V++ + ++ + D+I+NDRY+KV + D + Sbjct: 4 ISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKV 63 Query: 65 NEQIKYLRGMAIDINNAAGNEKRFGQMEVAVKQTKEALDKIAARQVTAVGQKKIKAVDEA 124 N + LR AI N +K +M+ Q E L ++ R T G + + A+ +A Sbjct: 64 NTGARSLRN-AIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQA 122 Query: 125 RQVFDTSRAELMALIRAGKGDAANEYVLRKITDAQNKYLDLARAFADSQSSQLSAEGAKA 184 R + R +++ LI K D A ++ K Q+KY + QSS + +A Sbjct: 123 RADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAERA 182 Query: 185 VEDGAMAIEVTLACSAVAVLASIILGYLMARSIVKPLTEAVRVAENVASGDLTTRIVPHS 244 + AI + L S VAVL S + L+ RSI +PL EAV+VA VA+GDLT +I S Sbjct: 183 SAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEATS 242 Query: 245 KDETGQLMQALRKMNDNLVNIVSGVRRGTDSIATASGEIASGNLDLSARTEQQAGSLEET 304 KDETG L+ AL+ MNDNL IV+ VR GTD+I TAS EIA+GNLDLS+RTEQQAG+LEET Sbjct: 243 KDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEET 302 Query: 305 ASAMEEMTSTVRQNADNARQANQMAASASQIALQGGEIVGRVVSTMEEINQSSRKIVDII 364 ASAMEE+TSTVRQNADNARQAN +A +ASQ+A+QGG +VG VV TM +IN +SRKIVDII Sbjct: 303 ASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDII 362 Query: 365 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIDDSV 424 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK+LID SV Sbjct: 363 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDASV 422 Query: 425 AKVEGGSHLVAEAGTTMEQVVNSVRNVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQ 484 +VE GS LV +AG TME+VV SV+ VTD+VAEI+AAS EQS GIE+IN+A+ QMDE TQ Sbjct: 423 ERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQ 482 Query: 485 QNAALVEQSAAAAKAMQEQAADLAKAISIFKLAEAEMKKTSAPAMVQPQPQPQPIRKPAT 544 QNAALVEQ+AAAA+++QEQ+ L+ + IF+L QP P P+++ Sbjct: 483 QNAALVEQAAAAAQSLQEQSGRLSDTVGIFRLGNDHAH--------QPSPLSAPVQRSVQ 534 Query: 545 TMPKARTVTAPARPIVS-APATAPALKAPS----------RIDDDAWETF 583 APARP+++ P T + A S + D WE F Sbjct: 535 --------VAPARPVLARKPVTRTSAPAKSIPAAQPVAQAALADGQWEQF 576 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 466 bits (1198), Expect = e-132, Method: Compositional matrix adjust. Identities = 284/514 (55%), Positives = 377/514 (73%), Gaps = 7/514 (1%) Query: 7 NLKVAVRLAAVFALIVGLLAVVSITAFVKINNINRSIDQIINDRYLKVRWAFDMRDGINE 66 ++K++VRLA FA+++G++ +++ +++I++S I+ DRY K+ A ++RD +N Sbjct: 5 DIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRDNVNG 64 Query: 67 QIKYLRGMAIDINNAAGNEKRFGQMEVAVKQTKEALDKIAARQVTAVGQKKIKAVDEARQ 126 + LR A+ N + + +T EAL K+ TA G++ +++ EAR Sbjct: 65 AARNLRN-ALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQEARS 123 Query: 127 VFDTSRAELMALIRAGKGDAANEYVLRKITDAQNKY---LDLARAFADSQSSQLSAEGAK 183 ++T R +L LI+ K + A E + ++ AQ+KY LD AF S Q EG Sbjct: 124 AYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTEGRD 183 Query: 184 AVEDGAMAIEVTLACSAVAVLASIILGYLMARSIVKPLTEAVRVAENVASGDLTTRIVPH 243 + AI + L SAVA+ +I +L+ RSI +PL EAV VA VA+GDLT +I Sbjct: 184 TTQS---AIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIGAT 240 Query: 244 SKDETGQLMQALRKMNDNLVNIVSGVRRGTDSIATASGEIASGNLDLSARTEQQAGSLEE 303 SKDETG L+ AL+ MND+L IVS VR+G+D+I TAS EIA+GNLDLS+RTE+QAG+LEE Sbjct: 241 SKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEE 300 Query: 304 TASAMEEMTSTVRQNADNARQANQMAASASQIALQGGEIVGRVVSTMEEINQSSRKIVDI 363 TASAMEE+TSTV+QNADNARQAN +AA+AS++A+QGG +VG+VV TM EIN +SRKIVDI Sbjct: 301 TASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDI 360 Query: 364 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIDDS 423 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIKALIDDS Sbjct: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS 420 Query: 424 VAKVEGGSHLVAEAGTTMEQVVNSVRNVTDIVAEISAASAEQSSGIEEINRAVTQMDEGT 483 V++V+ GS LV +AGTTM +VV SVR VTD+VAEISAAS EQS GIE+IN A+TQMD+ T Sbjct: 421 VSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVT 480 Query: 484 QQNAALVEQSAAAAKAMQEQAADLAKAISIFKLA 517 QQNAALVE++AAAA+++QEQ+ L+ +S+FKL+ Sbjct: 481 QQNAALVEEAAAAAQSLQEQSTRLSATVSVFKLS 514 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 427 bits (1099), Expect = e-121, Method: Compositional matrix adjust. Identities = 287/610 (47%), Positives = 379/610 (62%), Gaps = 58/610 (9%) Query: 5 FGNLKVAVRLAAVFALIVGLLAV---VSITAFVKINNINRSIDQIINDRYLKVRWAFDMR 61 +LK+ RL F L+ +L + V+ T F ++ N +N +VR Sbjct: 3 LADLKIGTRLYMGFGLVAAILVILVSVAYTNFARLGAANE-----LNVHTYEVR------ 51 Query: 62 DGINEQIKYLRGMAIDINNAAGNEKRFG---------QMEVAVKQTKEALDKIAARQVTA 112 LR MA + N ++ F + + K AL+K R +T+ Sbjct: 52 -------AQLRAMAESLINIETGQRGFSLSGIDASLEPYHLGMTTFKTALEK--TRTLTS 102 Query: 113 ---VGQKKIKAVDEARQVFDTSRA----ELMALIRAGKGDAANEYVLRKITDAQNKYLDL 165 + Q++++ + ++ Q + S EL +R G+ A + +++ +D Sbjct: 103 DNTLQQQRLQELSDSEQRWLKSAIDPAIELRRAVREGREQMAAVVAFEQAGKGKSQ-MDS 161 Query: 166 ARAFADSQSSQLSAEGAKAVEDGAMAIEVT----LACSAVAVLASIILGYLMARSIVKPL 221 R D SA + E+ A VT + A+A++ +++L + +A +I +PL Sbjct: 162 MRVLLDDLDRTESALLGERAEEAAALRSVTSTTLIGGGAIALMLAVLLAWWLANNITRPL 221 Query: 222 TEAVRVAENVASGDLTTRIVPHSKDETGQLMQALRKMNDNLVNIVSGVRRGTDSIATASG 281 AV++A VASGDLT RI S+DETG L+ AL+ MN++LV IVSGVRRGT+ IATAS Sbjct: 222 ALAVQLARRVASGDLTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASS 281 Query: 282 EIASGNLDLSARTEQQAGSLEETASAMEEMTSTVRQNADNARQANQMAASASQIALQGGE 341 EIA+GNLDLS+RTEQQA SLEETAS+MEE+TSTV+QN NAR+AN+MA +AS IA GG Sbjct: 282 EIATGNLDLSSRTEQQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGG 341 Query: 342 IVGRVVSTMEEINQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATE 401 +V RVV TMEEIN SSRKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+E Sbjct: 342 VVARVVDTMEEINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 401 Query: 402 VRSLAQRSAAAAKEIKALIDDSVAKVEGGSHLVAEAGTTMEQVVNSVRNVTDIVAEISAA 461 VRSLAQRSAAAAKEIKALI DSVAKVE GS LV EAG TM ++V SV+ VT+++ EISAA Sbjct: 402 VRSLAQRSAAAAKEIKALISDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEISAA 461 Query: 462 SAEQSSGIEEINRAVTQMDEGTQQNAALVEQSAAAAKAMQEQAADLAKAISIFKLAEA-- 519 EQ SGIE++++AV QMD+ TQQNAALVEQ+AAA++++QEQA +LA+A+S+F+L Sbjct: 462 GEEQRSGIEQVSQAVGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAGQA 521 Query: 520 -EMKKTSAPAMVQP-----QPQPQPIRKPATTMPKARTVTAPARPIVSAPATAPALKAPS 573 E+ APA V +P + R P+ P A +P P APA+ L S Sbjct: 522 LEVAPEPAPASVAASRSGVRPATRSSRLPSPVGPSASPSASPMHP---APASGSRL---S 575 Query: 574 RIDDDAWETF 583 D D W TF Sbjct: 576 SADADEWVTF 585 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 416 bits (1068), Expect = e-117, Method: Compositional matrix adjust. Identities = 261/511 (51%), Positives = 339/511 (66%), Gaps = 3/511 (0%) Query: 7 NLKVAVRLAAVFALIVGLLAVVSITAFVKINNINRSIDQIINDRYLKVRWAFDMRDGINE 66 NLK+ VRLA F ++ L+AV+ ++ +I + D + K R A I E Sbjct: 3 NLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAIKE 62 Query: 67 QIKYLRGMAIDINNAAGNEKRFGQMEVAVKQTKEALDKIAARQVTAVGQKKI-KAVDEAR 125 +R A+ ++ + F + A L K +T +K++ V + R Sbjct: 63 --NGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLR 120 Query: 126 QVFDTSRAELMALIRAGKGDAANEYVLRKITDAQNKYLDLARAFADSQSSQLSAEGAKAV 185 + +R + + AG A E + + Y D +AD Q + A Sbjct: 121 AAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAIN 180 Query: 186 EDGAMAIEVTLACSAVAVLASIILGYLMARSIVKPLTEAVRVAENVASGDLTTRIVPHSK 245 D + LA A+ ++ L +L+ RSI +PL +AV +AE VA+GDLT+RI S+ Sbjct: 181 RDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSR 240 Query: 246 DETGQLMQALRKMNDNLVNIVSGVRRGTDSIATASGEIASGNLDLSARTEQQAGSLEETA 305 DETG+L+ AL+ MN NL++IV VR GT++I TAS EIA+GNLDLSARTE QAGSLEETA Sbjct: 241 DETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETA 300 Query: 306 SAMEEMTSTVRQNADNARQANQMAASASQIALQGGEIVGRVVSTMEEINQSSRKIVDIIG 365 SAME++TSTV+QNADNARQAN++AASASQ+A QGG +V +VV+TM I+ SS+KI DIIG Sbjct: 301 SAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIG 360 Query: 366 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIDDSVA 425 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LIDDSV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVE 420 Query: 426 KVEGGSHLVAEAGTTMEQVVNSVRNVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQ 485 KV+ GS LVA AG TM++VV SV VT +V EI+ AS EQS GIE++N A+T +DE TQQ Sbjct: 421 KVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQ 480 Query: 486 NAALVEQSAAAAKAMQEQAADLAKAISIFKL 516 NAALVEQ+AAAA++MQ+QAA L A+S+F+L Sbjct: 481 NAALVEQAAAAARSMQDQAASLTDAVSVFRL 511 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.125 0.326 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,274,203 Number of extensions: 43838 Number of successful extensions: 668 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 398 Number of HSP's successfully gapped: 72 Length of query: 583 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 493 Effective length of database: 1,193,720 Effective search space: 588503960 Effective search space used: 588503960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)