BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2475.p
         (294 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311628|ref|YP_003775720.1| metallo-beta-lactamase [Herbasp...   511   e-146

>gi|300311628|ref|YP_003775720.1| metallo-beta-lactamase
           [Herbaspirillum seropedicae SmR1]
          Length = 292

 Score =  511 bits (1315), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 244/290 (84%), Positives = 261/290 (90%)

Query: 4   LQNMHIEGYFDPATSTVSYLVLDRASGQCALIDSVLDYDPKSGRTATRSADQLIARVEAL 63
           +  +HIEG+FD  TSTVSYLVLDRASGQCALID+VLDYDPKSGRTAT SADQLIARV  L
Sbjct: 2   MDKLHIEGHFDTTTSTVSYLVLDRASGQCALIDTVLDYDPKSGRTATTSADQLIARVREL 61

Query: 64  GARVQWILETHAHADHLSAAPYLKQKLGGRIAIGEHIRQVQQVFGRLFNAGTEFEHDGSQ 123
           GA+VQWILETHAHADHLSAAPYLKQ+LGGRIAIGEHI QVQ VFG+LFNAG  F HDGSQ
Sbjct: 62  GAQVQWILETHAHADHLSAAPYLKQQLGGRIAIGEHITQVQAVFGKLFNAGAAFAHDGSQ 121

Query: 124 FDHLFADGETFLIGQLPARVMHTPGHTPACLTYVVEAAGEIAAFVGDTLFMPDYGTARCD 183
           FD LFADG  F IGQL ARVMHTPGHTPACLTYVVE AG IAAFVGDTLFMPDYGTARCD
Sbjct: 122 FDQLFADGARFQIGQLQARVMHTPGHTPACLTYVVEEAGHIAAFVGDTLFMPDYGTARCD 181

Query: 184 FPGGDARRLYQSIHAVLALPPATRLYMCHDYQPNGRELRFVTTVAEERQHNIHVHEGISE 243
           FPGGDAR L++SI AVL+LP   +LYMCHDY+PNGRELR+VTTVAEER+HNIHVHEG+SE
Sbjct: 182 FPGGDARTLFRSIQAVLSLPDHAQLYMCHDYRPNGRELRYVTTVAEERRHNIHVHEGVSE 241

Query: 244 DDFVAMRSARDATLDMPVLLLPSVQVNMRAGQMPPPEANGVRYLKIPLNA 293
           + FV MR ARDATLDMPVLLLPSVQVNMRAGQ+PP E NGVRYLKIPLNA
Sbjct: 242 ESFVTMRKARDATLDMPVLLLPSVQVNMRAGQLPPAEDNGVRYLKIPLNA 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,001,246
Number of extensions: 43358
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 210
Effective length of database: 1,222,130
Effective search space: 256647300
Effective search space used: 256647300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)