BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2474.p
         (142 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311629|ref|YP_003775721.1| transmembrane protein [Herbaspi...   187   3e-49

>gi|300311629|ref|YP_003775721.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 139

 Score =  187 bits (474), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 98/133 (73%), Positives = 114/133 (85%)

Query: 6   SLSAGVAGLIFGLGLIVSGMANPAKVLGFLDLAGAWDPSLALVMAGAIGIGVPAFAWARK 65
           +L+A ++GL+FG GL++SGMA+PAKVL FLDLAGAWDPSL LVMA AI +GVPAFA AR+
Sbjct: 3   ALTALLSGLVFGFGLLLSGMADPAKVLAFLDLAGAWDPSLMLVMAAAIAVGVPAFAHARR 62

Query: 66  RQQSLLGAPLQLPSATGIDRRLVLGSLLFGVGWGMAGICPGPALVLLGMGSLKGLAFVLA 125
            + SLLG P+QLP+A  IDRRLVLGSL+FGVGWGMAGICPGPALVL+G G  KGL FVLA
Sbjct: 63  MKASLLGQPMQLPAARQIDRRLVLGSLVFGVGWGMAGICPGPALVLVGAGQFKGLVFVLA 122

Query: 126 MLAGMKLFGWLQR 138
           MLAGM LF  L+R
Sbjct: 123 MLAGMLLFALLER 135


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.144    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 545,592
Number of extensions: 26982
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 66
Effective length of database: 1,260,010
Effective search space: 83160660
Effective search space used: 83160660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)