BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2473.p
         (144 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311630|ref|YP_003775722.1| transmembrane protein [Herbaspi...   175   2e-45

>gi|300311630|ref|YP_003775722.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 144

 Score =  175 bits (443), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/144 (70%), Positives = 116/144 (80%)

Query: 1   MQIAWHTFTPGWSLIGGLLIGLAAAVLLLFNGRIAGVSGIVAGLLTPRHPDTAWRGLFVL 60
           MQ+ W  FTP  +L GG LIGLAAA+L+L NGR+AGVSGI+ GLL PR  D AWR +F+L
Sbjct: 1   MQVDWTAFTPVTALAGGALIGLAAAILILANGRVAGVSGILGGLLQPRAGDRAWRAMFLL 60

Query: 61  GLVAAPLLYGAVTALPASQIEASYPQIILAGLLVGLGTRYGAGCTSGHGVCGLSRFSLRS 120
           GL+AAPLL     +LP   I+A   QI+LAGLLVGLGTRYGAGCTSGHGVCGLSRFSLRS
Sbjct: 61  GLLAAPLLMRLGASLPPIHIDAGLGQIVLAGLLVGLGTRYGAGCTSGHGVCGLSRFSLRS 120

Query: 121 AMATFCFMMAGFASVYVLRHLLGL 144
           A+AT CFMMAGF SVY+LRH+ GL
Sbjct: 121 AVATVCFMMAGFVSVYLLRHVAGL 144


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.144    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 469,496
Number of extensions: 19287
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,255,275
Effective search space: 84103425
Effective search space used: 84103425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)