BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2470.p
         (530 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311634|ref|YP_003775726.1| NADH:ubiquinone oxidoreductase ...   643   0.0  
gi|300311106|ref|YP_003775198.1| transmembrane NADH dehydrogenas...   119   5e-28

>gi|300311634|ref|YP_003775726.1| NADH:ubiquinone oxidoreductase
           subunit L/Multisubunit Na+/H+ antiporter MnhA subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 536

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/533 (70%), Positives = 424/533 (79%), Gaps = 12/533 (2%)

Query: 5   MAPFQCMRFS---VMTTLP-LLSTIAWAPPVLMLVTAATLGLFPLVPARAWKLFQAMSLA 60
           M P     FS   +M TL  L S + WAPP  M VTA  L L    P   W+LFQA S+ 
Sbjct: 1   MRPSNHTLFSGAYIMFTLSHLTSLLPWAPPAAMFVTALALMLARPTPQGLWRLFQATSML 60

Query: 61  ALLLTLVTLFADRQASPWPGVLHLSVLGMLLSVLVQGLGTVIGSFSARYLEGEPGQRQYA 120
           AL L +++L   R A+PWPGVL +SV+G++L+VLVQGLG VIG+FSARYL+GE GQRQYA
Sbjct: 61  ALTLAVLSLCLARGATPWPGVLQVSVIGLVLAVLVQGLGAVIGAFSARYLQGEGGQRQYA 120

Query: 121 AALAAVLCAVHLLLLADHWIVLIAAWAVVGLALQRLLCFYPERPFARLASFKKSIADRLA 180
            ALAAVL AVHLLLLADHW+VLIAAWA VGLAL+ LLCFYPERPFARLA++KK IADRLA
Sbjct: 121 VALAAVLTAVHLLLLADHWLVLIAAWAAVGLALEHLLCFYPERPFARLAAYKKRIADRLA 180

Query: 181 DLLLIAAAVLAWTTVGSGSLPALWAHLAQYGMSTGLQASAMCLTLAVILRTALLPVHGWL 240
           DLLL  AA+LAW+  GSGSL ALW HLA +GMS GLQ SA+C+ LAVILRTALLPVHGWL
Sbjct: 181 DLLLGVAALLAWSATGSGSLSALWQHLAAHGMSAGLQVSALCVVLAVILRTALLPVHGWL 240

Query: 241 IQVMEAPTPVSALLHAGVVNLGGFVLVRFAPLLEQALPARSVLLLVSAGTVLLAGLVMLT 300
           IQVMEAPTPVSALLHAGVVNLGGFVL+RFAPLL+QA+PARSVLLL++  TVLLAG+VMLT
Sbjct: 241 IQVMEAPTPVSALLHAGVVNLGGFVLIRFAPLLQQAIPARSVLLLMAVATVLLAGMVMLT 300

Query: 301 RISIKVKLAWSTVAQMGFMLLECAAGLYLFAALHLIGHSLYKAHAFLSASSVVRETRLHA 360
           RISIKV+LAWSTVAQMGFMLLECAAGLY FAALHLIGHSLYKAHAFLSASSVVRETRL A
Sbjct: 301 RISIKVRLAWSTVAQMGFMLLECAAGLYTFAALHLIGHSLYKAHAFLSASSVVRETRLQA 360

Query: 361 LHSPAQPAGISVVLAPVVSLALVLALHSASPHAAWPWWWSGVLGLAWAPLLWLPASSGTA 420
           LH  AQP+  SV++AP+ S A+VLAL +   H  WPWWWS VLGLAWAPLLWLP +S  +
Sbjct: 361 LHDKAQPSAASVIVAPLASSAVVLALQTLHAHTGWPWWWSVVLGLAWAPLLWLPQASTVS 420

Query: 421 ---RVRRALLGLLGAAALTLAALLAHLLPLQIADAPNTFFGVAALLTMLALYTCMGLLQL 477
              R+R  LLGL GAA LT+AA+L HLLPL + D     FG+A L  MLALY C+ LL +
Sbjct: 421 TAMRLRSWLLGLTGAAGLTVAAMLLHLLPLGLDDFAQPLFGMATLAGMLALYGCVALLLV 480

Query: 478 TPHSMAAWRRRSYAGFYLDEAYTRLALQCWPAHWAPSARRA-----ASELVSD 525
            P +M AWRRRSYAGFYLDEAYTRLALQ WPA WAP ARRA      S L SD
Sbjct: 481 RPQAMTAWRRRSYAGFYLDEAYTRLALQLWPARWAPQARRAPHRAPPSTLASD 533


>gi|300311106|ref|YP_003775198.1| transmembrane NADH dehydrogenase I
           subunit L [Herbaspirillum seropedicae SmR1]
          Length = 696

 Score =  119 bits (298), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 163/318 (51%), Gaps = 23/318 (7%)

Query: 59  LAALLLTLVTLFADRQASPWPGVLH--LSVLGMLLSV-------------LVQGLGTVIG 103
           L A +++L TL A    + + G L+  ++V G+ L +             +V  +  ++ 
Sbjct: 50  LIAAIISLQTLLAVLDGATYNGTLYNWMTVAGLKLEIGFMVDSLTAMMMCVVTFVSLMVH 109

Query: 104 SFSARYLEGEPGQRQYAAALAAVLCAVHLLLLADHWIVLIAAWAVVGLALQRLLCFYPER 163
            ++  Y+  + G  ++ + ++    ++ +L+++++++ L   W  VGL    L+ F+  R
Sbjct: 110 IYTIGYMAEDEGYNRFFSYISLFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTR 169

Query: 164 PFARLASFKKSIADRLADLLLIAAAVLAWTTVGSGSLPALW---AHLAQYGMSTG----L 216
           P A  A+ K  + +R+ D   I    L     GS +   ++   A LAQ  +       L
Sbjct: 170 PTAIKANMKAFLVNRVGDFGFILGIGLLLAYAGSMNYTEVFDKRAELAQLTLPGTDWMLL 229

Query: 217 QASAMCLTLAVILRTALLPVHGWLIQVMEAPTPVSALLHAG-VVNLGGFVLVRFAPLLEQ 275
             + +CL +  + ++A  P+H WL   ME PTP+SAL+HA  +V  G F++ R +PL E 
Sbjct: 230 TVACICLFVGAMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRMSPLFEL 289

Query: 276 ALPARSVLLLVSAGTVLLAGLVMLTRISIKVKLAWSTVAQMGFMLLECAAGLYLFAALHL 335
           +  A S +L++ A T L  G +   +  IK  +A+ST++Q+G+M +   A  Y  A  HL
Sbjct: 290 SDTALSFILVIGAITALFMGFLGTMQNDIKRVVAYSTLSQLGYMTVALGASAYSVAVFHL 349

Query: 336 IGHSLYKAHAFLSASSVV 353
           + H+ +KA  FL A SV+
Sbjct: 350 MTHAFFKALLFLGAGSVI 367


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,276,963
Number of extensions: 43728
Number of successful extensions: 306
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 4
Length of query: 530
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 440
Effective length of database: 1,193,720
Effective search space: 525236800
Effective search space used: 525236800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 133 (55.8 bits)