BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2469.p
         (842 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311635|ref|YP_003775727.1| hypothetical protein Hsero_2320...  1206   0.0  

>gi|300311635|ref|YP_003775727.1| hypothetical protein Hsero_2320
           [Herbaspirillum seropedicae SmR1]
          Length = 838

 Score = 1206 bits (3119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/804 (76%), Positives = 694/804 (86%), Gaps = 9/804 (1%)

Query: 42  WPLDRAIAVNPHWSRVKMPLRQVAARMALLGGIQVFPPRDQLQQAWDQGRVTGADLDYAL 101
           WPLDRAIAVNPHWSR+ MPLR+VAARMALLGGIQV P R QL+QAW +GR++ ADL  AL
Sbjct: 39  WPLDRAIAVNPHWSRIGMPLREVAARMALLGGIQVLPARAQLRQAWAEGRISAADLHLAL 98

Query: 102 AQSSQAQERGLDAAHCLAVLASAALPPRLPLLIDVLDNDPQRHTRLSWRQAITHQVSQTC 161
            +   A+  GLDAAHC AVLAS + P +LPLLIDVLDNDPQRHTRLSWRQAITHQVSQTC
Sbjct: 99  GRLPAARAAGLDAAHCQAVLASDSRPAQLPLLIDVLDNDPQRHTRLSWRQAITHQVSQTC 158

Query: 162 AAYFDQHQADWQPERGRGLYAFWRETLEHDHGIGLLMGLPHIADGIKALPACAREAERWV 221
           AAYFD+HQADWQPER  GLYAFWRETLEHDHGIGLLMGLPHIA GI+ALPACAREAERWV
Sbjct: 159 AAYFDRHQADWQPERDNGLYAFWRETLEHDHGIGLLMGLPHIAHGIQALPACAREAERWV 218

Query: 222 MKRLALPPEVWADYLESVLLTVNGWASWCAYLGWQAQLEGSSDEHLRELLAIRMAWGALL 281
           M+RL LP EVWADYLE+VLLTVNGWASWCAYLGWQA+L+G  D HLRELLAIRMAWGALL
Sbjct: 219 MQRLGLPAEVWADYLEAVLLTVNGWASWCAYLGWQARLQGQDDPHLRELLAIRMAWGALL 278

Query: 282 LECKDDDAASHAFHTVQQAWARSQERLQQAQQELLVDELWQLALEAGYQRQLASALRQQG 341
           LECKDDDAA+ AF TVQQAW R++ERLQQ + EL+VDE+WQLALE GYQRQLA AL Q  
Sbjct: 279 LECKDDDAATQAFSTVQQAWGRARERLQQVRDELVVDEVWQLALEVGYQRQLAQALLQDR 338

Query: 342 AASVKDAARVEVQAAFCIDVRSEPLRRALEAVSPGIQTLGFAGFFGLPVAYTPLATQASR 401
            A+    A +EVQAAFCIDVRSEP+RRALE + PG+QTLG AGFFGLPVAYTPL TQA+R
Sbjct: 339 TAA---GAAIEVQAAFCIDVRSEPMRRALERLHPGVQTLGVAGFFGLPVAYTPLGTQAAR 395

Query: 402 PQLPGLLAPAYQVQDVVAP-----SGAADSGVLAEAVARARRKTLAFQDQWQGNTRWPGS 456
           PQLPGLLAPAYQVQ+ + P     +GAADS VLA A ARAR + LA + QWQGNTRWPGS
Sbjct: 396 PQLPGLLAPAYQVQEQIIPAAGAGAGAADSTVLASAAARARHRQLAGKAQWQGNTRWPGS 455

Query: 457 AFSFVEVAGVTALGGLWKWLRPGQGERARDDLAGLPTRYRELCRPQLVGVALAEKVALAE 516
           AFSFVEVAGV+ALGGLW WLRPG+G RARDDLAGLPTRYR LCRPQL GV+ A+KVALA 
Sbjct: 456 AFSFVEVAGVSALGGLWNWLRPGRGARARDDLAGLPTRYRALCRPQLSGVSEADKVALAA 515

Query: 517 RVLHAMGLDRQVAPLVLLVGHGSQTTNNAHAAALDCGACCGQTGEVNARTLAQLLNEREV 576
           R+LHAMGLDR VAPLVLLVGHGSQ+ NNAHAAALDCGACCGQTGEVNARTLAQLLNE  V
Sbjct: 516 RILHAMGLDRAVAPLVLLVGHGSQSANNAHAAALDCGACCGQTGEVNARTLAQLLNEHSV 575

Query: 577 RRGLLERQIVIPEDSHFLAVLHNTTTDEIEAFDLDLLEPAAQARWQALQPLLAEAGDRVR 636
           RRGLL + + +PE++ FLA+LHNTTTDE+EAFDLDLL   AQ RW A++ + A AG++VR
Sbjct: 576 RRGLLAQGVDLPEETAFLALLHNTTTDEVEAFDLDLLPAPAQQRWAAMREVFARAGEQVR 635

Query: 637 RERAPRLGVADAALDAPALLKQLRRRANDGAQPRPEWGLTGNAAFVIAPRARSRGLDLGG 696
           RERA RLG+ D    A  LL+ LRRRANDGAQ RPEWGLTGNAAF+IAPRARSRG+DLGG
Sbjct: 636 RERAARLGL-DGEQPAARLLQALRRRANDGAQTRPEWGLTGNAAFLIAPRARSRGIDLGG 694

Query: 697 RCFLHDYQASQDRDGSVLELLMTAPMLVTHWINWQYHASTSDPARLGSGNKLLHNVVGGT 756
           RCFLHDY  ++D +G++LE LMTAPMLVTHWINWQYHASTSDP RLGSGNKLLHNVVGG 
Sbjct: 695 RCFLHDYDPTEDGEGALLEQLMTAPMLVTHWINWQYHASTSDPQRLGSGNKLLHNVVGGA 754

Query: 757 IGVFEGNGGDLRIGLSRQSLHDGRQWVHEPLRLTVVIDATQEAIDAIVSRHAIVRQLLEH 816
           IGVFEGNGGDLRIGL+RQSLHDG++W+HEPLRLTVVIDA + AI+ +++ HA+VRQLLE+
Sbjct: 755 IGVFEGNGGDLRIGLARQSLHDGQRWLHEPLRLTVVIDAPEAAIERVIAAHAVVRQLLEN 814

Query: 817 GWLHLWRFSEEGFEQWRREGWKSL 840
           GWLHLWRF E G  +   +GW ++
Sbjct: 815 GWLHLWRFGEAGLLERGEQGWVAV 838


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,847,578
Number of extensions: 126833
Number of successful extensions: 455
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 1
Length of query: 842
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 749
Effective length of database: 1,179,515
Effective search space: 883456735
Effective search space used: 883456735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 135 (56.6 bits)