BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2461.p
         (309 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309861|ref|YP_003773953.1| cation efflux protein [Herbaspi...   348   3e-97

>gi|300309861|ref|YP_003773953.1| cation efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  348 bits (894), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 187/290 (64%), Positives = 224/290 (77%)

Query: 20  RTKAASQSTWVSVAVNLLLTLLQIMAGVFSKSQGLIADGIHSLSDLVADFVVLLANHHSK 79
           R +A   ST VS+ VN+ L +LQ+ AGVFS SQ LIADGIHSLSDLV+DFVVLLA HHS+
Sbjct: 15  RHRAGRTSTLVSILVNIALVILQVTAGVFSGSQALIADGIHSLSDLVSDFVVLLAGHHSR 74

Query: 80  KDADEEHPYGHHRFETAASLVLGMLLLTVGLGMLWSAIVKLDNPKSVQEVHVLALWVAGG 139
           K  D++H YGH R+E AASL LG LLL VG+GML+SA  K+        VHV ALWVA  
Sbjct: 75  KQPDDDHQYGHQRYENAASLALGALLLAVGVGMLFSAAQKIQAYGHTPPVHVAALWVALT 134

Query: 140 ALLAKELLFRYMLSVAKRVKSSMLVANAWHARSDAASSLVVGIGIAGNLAGYPILDPIAA 199
           ALLAKELLFRYML +A+RV+SSMLVANAWHARSDAASSLVV +GI G+LAG+ +LDP+AA
Sbjct: 135 ALLAKELLFRYMLRIAERVRSSMLVANAWHARSDAASSLVVALGIVGSLAGFTLLDPVAA 194

Query: 200 LIVGVMVVKMGWEFAWEALHDLMDRAVDQDELEAICRTLLETPGVNGIHDVRTRKMGDMI 259
            +VG+MVV+ GW F W ALHDLMDRAV  DE +AI  TLL TPGV G+HD+RTR+MGD+ 
Sbjct: 195 AVVGLMVVRTGWGFFWSALHDLMDRAVSADEAQAIRATLLATPGVQGVHDLRTRRMGDLT 254

Query: 260 VVDAHLEVDALMTVEAGHEIAVLARQHVMQRHRVLNLMTHIDPWRRPDPG 309
           +VD HLE+D  +TV AGH IA  AR+ V+  H VL++MTH+DP   P P 
Sbjct: 255 LVDVHLEIDGALTVTAGHAIATAARRRVLDAHHVLDVMTHVDPVESPHPA 304


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 855,781
Number of extensions: 31204
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,217,395
Effective search space: 272696480
Effective search space used: 272696480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)