BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2460.p (271 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311637|ref|YP_003775729.1| metal ion ABC transporter perip... 464 e-132 gi|300314030|ref|YP_003778122.1| metal ion ABC transporter perip... 152 2e-38 gi|300310325|ref|YP_003774417.1| metal ion ABC transporter perip... 147 1e-36 gi|300311120|ref|YP_003775212.1| metal ion ABC transporter perip... 142 3e-35 gi|300310887|ref|YP_003774979.1| metal ion ABC transporter perip... 125 4e-30 >gi|300311637|ref|YP_003775729.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 464 bits (1193), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/271 (85%), Positives = 248/271 (91%), Gaps = 3/271 (1%) Query: 1 MKLSRLLLLVLTLASLPLAHVAQAADKLRIGVVPGAYGDSVAVAAKEAKSQGIDVQVVEF 60 MK S L+ L LT+ SL AQAADKLRIGVVPGAYGDSVAVAAKEAK QGIDVQVVEF Sbjct: 1 MKFSHLVFLSLTVLSL---QAAQAADKLRIGVVPGAYGDSVAVAAKEAKRQGIDVQVVEF 57 Query: 61 TDWTTPNVAVDAGDLDLNYFQHQPFLDNAIKKNGYKLASAGTGILSNVGLYSLKHKSFAE 120 TDWTTPNVA+DAGDLDLNYFQHQPFLDNAI+KNGYKLASAGTGILSNVGLYSLK+KS Sbjct: 58 TDWTTPNVALDAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGILSNVGLYSLKYKSLTA 117 Query: 121 LPQGAKVGIANDPVNQGRGLLLLQSVGLIKLKPNVGYLGSLDDIVENPKKLTFVEVEGPQ 180 LPQGAKVGIANDPVNQGR LLLLQ+VGLIKLKP VGYLGS+DDI++NP+KL+FVEVEGPQ Sbjct: 118 LPQGAKVGIANDPVNQGRALLLLQNVGLIKLKPKVGYLGSIDDIIDNPRKLSFVEVEGPQ 177 Query: 181 LVRITPDVDLALGYPHFIVAAKAFDASSGLAYSGISDARFAIQFVTKASRVNDPVVQKFI 240 LVRITPDVDLA GYPHFIVAAKAFD SSGLAYSGI DARFAIQFVT+A+RVNDPVVQKFI Sbjct: 178 LVRITPDVDLAQGYPHFIVAAKAFDPSSGLAYSGIEDARFAIQFVTRANRVNDPVVQKFI 237 Query: 241 HIYQNSAAVKAVIHRAFNNDNRLYTLAWQKQ 271 IYQNSAAV+A I RAFN+D+RLYTLAW K+ Sbjct: 238 QIYQNSAAVRADIGRAFNHDSRLYTLAWLKK 268 >gi|300314030|ref|YP_003778122.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 276 Score = 152 bits (385), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 97/262 (37%), Positives = 136/262 (51%), Gaps = 9/262 (3%) Query: 3 LSRL-LLLVLTLASLPLAHVAQAADKLRIGVVPGAYGDSVAVAAK--EAKSQGIDVQVVE 59 L RL L+V LASL L A A +R+GV G + A + E + G V+++E Sbjct: 9 LRRLSTLMVSMLASLVLNAQAAADQVIRVGVTSGPHAQIFEQARRVFERDNPGYKVKIIE 68 Query: 60 FTDWTTPNVAVDAGDLDLNYFQHQPFLDNAIKKNGYKLASAGTGILSNVGLYSLKHKSFA 119 F D+ PN A+DAG+LD N +QH+PFL+ IK GYKL + G ++ + +YS K++ Sbjct: 69 FNDYIQPNAALDAGELDANSYQHRPFLNAQIKTRGYKLYAEGKTMIGPMAIYSRKYRKLE 128 Query: 120 ELPQGAKVGIANDPVNQGRGLLLLQSVGLIKLK----PNVGYLGSLDDIVENPKKLTFVE 175 ++P GA++GI NDP N+ R LLLLQ G IKL+ P G + DI ENPKK FVE Sbjct: 129 DVPVGARIGIPNDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPIDITENPKKWKFVE 188 Query: 176 VEGPQLVRITPDVDLALGYPHFIVAAKAFDASSGLAYSGISDARFAIQFVTKASRVNDPV 235 ++ QL R D+D + + A A L D+ +A + P Sbjct: 189 IDAAQLPRTLDDLDASAVNADYAAKAGLNPARDSLVVES-GDSPYACLIAVREKDRAQPW 247 Query: 236 VQKFIHIYQNSAAVKAVIHRAF 257 + K + YQ S VK I F Sbjct: 248 LGKLVQAYQ-SPEVKRYIETEF 268 >gi|300310325|ref|YP_003774417.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 147 bits (370), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 96/257 (37%), Positives = 145/257 (56%), Gaps = 3/257 (1%) Query: 1 MKLSRLLLLV--LTLASLPLAHVAQAADKLRIGVVPGAYGDSVAVAAKEAKSQGIDVQVV 58 MK +L+ + L LA+ ++ A A D++++GV G + + + K + G+ ++V+ Sbjct: 1 MKRRQLIQFIAGLGLAAGLVSAPAFAQDQIKMGVTAGPHAEIMEQVKKLLEKDGVQMKVI 60 Query: 59 EFTDWTTPNVAVDAGDLDLNYFQHQPFLDNAIKKNGYKLASAGTGILSNVGLYSLKHKSF 118 EFTD+ PN A+ AGDLD N +QHQP+LD IK GYK S G+ I +G+YS K KS Sbjct: 61 EFTDYIQPNAALAAGDLDANSYQHQPYLDAQIKDRGYKFVSVGSTITFPMGVYSKKIKSL 120 Query: 119 AELPQGAKVGIANDPVNQGRGLLLLQSVGLIKLKPNVGYLGSLDDIVENPKKLTFVEVEG 178 +L QGA+VG+ NDP N GR LL+LQ+ G+IKLK + G + DIVENPKK+ VE++ Sbjct: 121 NDLKQGARVGVPNDPTNGGRALLVLQAKGVIKLKADAGLKATPLDIVENPKKIKIVELDA 180 Query: 179 PQLVRITPDVDLALGYPHFIVAAKAFDASSGLAYSGISDARFAIQFVTKASRVNDPVVQK 238 QL R D D A+ ++ +A +A S +A + + + P V K Sbjct: 181 AQLPRSLDDFDAAVINGNYAESAGLSPTKDAIAVEA-STGPYANVIAVRIADKDKPWVAK 239 Query: 239 FIHIYQNSAAVKAVIHR 255 + Y + K V+ + Sbjct: 240 LVKAYHSPEVKKFVLEK 256 >gi|300311120|ref|YP_003775212.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 142 bits (358), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 98/254 (38%), Positives = 139/254 (54%), Gaps = 13/254 (5%) Query: 11 LTLASLPLAHVAQAADKLRIGVVPGAYGDSVAVAAKEAKSQGIDVQVVEFTDWTTPNVAV 70 L+LA +P AQ K+++G+ G+ V K A G+++Q V F+D+ PN A+ Sbjct: 19 LSLALVPQLGQAQDKQKIKVGISVGSAEAIFDVVKKVAARDGLEIQTVVFSDYLQPNAAL 78 Query: 71 DAGDLDLNYFQHQPFLDNAIKKNGYKLASAGTGILSNVGLYSLKHKSFAELPQGAKVGIA 130 AGDLD N FQH+P+L++ I GY++ G I + +G+YS K +S +LPQGA +GI Sbjct: 79 AAGDLDANAFQHRPYLESQIAARGYRIVPVGLTITAPLGIYSRKFRSVEQLPQGAAIGIQ 138 Query: 131 NDPVNQGRGLLLLQSVGLIKLKPNVGYLG---SLDDIVENPKKLTFVEVEGPQLVRITPD 187 NDP N R LLLLQ GLI+LKP VG G + D++ENP+KL VE++ QL R D Sbjct: 139 NDPSNGNRALLLLQKAGLIRLKPGVGENGVNATPLDVIENPRKLKLVELDAAQLPRSLDD 198 Query: 188 VDLALGYPHFIVAAKAFDASSGLAYSGIS----DARFAIQFVTKASRVNDPVVQKFIHIY 243 + A I AF A L I+ R+A T+A + P V+K + Y Sbjct: 199 LAAA-----SINNDYAFKAGLSLQKDTIAVEDPRGRYANIIATRAEDKDRPWVRKLVQAY 253 Query: 244 QNSAAVKAVIHRAF 257 +S V+ I F Sbjct: 254 -HSEEVRKFIETEF 266 >gi|300310887|ref|YP_003774979.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 125 bits (314), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 87/257 (33%), Positives = 127/257 (49%), Gaps = 5/257 (1%) Query: 3 LSRLLLLVLTLASLPLAHVAQAADKLRIGVVPGAYGDSVAVAAKEAKSQGIDVQVVEFTD 62 + +L+ + A+L + A AADKL I P + + + +GID+QV FTD Sbjct: 2 IRKLIPHLFAGAALAFSVGAHAADKLVIAATPVPHAEILEHIKPALAKEGIDLQVKVFTD 61 Query: 63 WTTPNVAVDAGDLDLNYFQHQPFLDNAIK--KNGYKLASAGTGILSNVGLYSLKHKSFAE 120 + P + +D N+F HQP+LD K KN ++ A + YS K+K A+ Sbjct: 62 YVQPAAQTNEKQVDGNFFLHQPYLDQFKKSHKNDIEVPVAKVHV-EPFAAYSQKYKKIAD 120 Query: 121 LPQGAKVGIANDPVNQGRGLLLLQSVGLIKLKPNVGYLGSLDDIVENPKKLTFVEVEGPQ 180 +P GA + I NDP N GR LLLL GLIKLK N + DIVENPKKL F +E Sbjct: 121 IPNGATIAIPNDPSNSGRALLLLARNGLIKLKDNTNISATQKDIVENPKKLKFRALEAAT 180 Query: 181 LVRITPDVDLALGYPHFIVAAKAFDASSGLAYSGISDARFAIQFVTKASRVNDPVVQKFI 240 L R+ VD+AL ++ + AK L + +++ +A V + + P ++K Sbjct: 181 LPRVLNQVDVALINTNYALEAKLNPVKDSL-FIEDANSPYANLLVAREDNKDSPAIKKLA 239 Query: 241 HIYQNSAAVKAVIHRAF 257 NS VK I + Sbjct: 240 AAL-NSPDVKKFIEEKY 255 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 798,594 Number of extensions: 33582 Number of successful extensions: 105 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 102 Number of HSP's successfully gapped: 5 Length of query: 271 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 187 Effective length of database: 1,222,130 Effective search space: 228538310 Effective search space used: 228538310 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)