BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2459.p (390 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 590 e-170 gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 291 9e-80 gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPas... 285 5e-78 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 187 1e-48 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 183 2e-47 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 590 bits (1522), Expect = e-170, Method: Compositional matrix adjust. Identities = 310/389 (79%), Positives = 335/389 (86%), Gaps = 7/389 (1%) Query: 1 MELTITARQSLTAPSRFELQREPVPTSTLAGSKSGAARKGSVALRGVGKTYTSSAGPVQA 60 MEL+ITARQSLTAPSR E REP T LA G G VALRGVGKTY S+AGPVQA Sbjct: 1 MELSITARQSLTAPSRPEHVREP--TVALATPARGGPH-GKVALRGVGKTYVSAAGPVQA 57 Query: 61 LQEIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLETPTSGRVEVDGVDLATLNEGQLVDL 120 LQ+IDLEIAPGSIFGIIGRSGAGKSSLLRTINRLE PTSGRVEVD VDLATL+E QLV L Sbjct: 58 LQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVDLATLDETQLVAL 117 Query: 121 RRRIGMIFQHFNLLSAKTVFDNVALPLRVAGVPRLQVESRVRELLALVGLADKADTYPRR 180 RRRIGMIFQHFNLL+AKTVFDN+ALPLRVAGVPR Q+ RV ELLALVGL DKAD+YPRR Sbjct: 118 RRRIGMIFQHFNLLAAKTVFDNIALPLRVAGVPRAQITQRVHELLALVGLQDKADSYPRR 177 Query: 181 LSGGQKQRVGIARALASGPEILLCDEATSALDPETTHAILQLLREINRKLGITIILITHE 240 LSGGQKQRVGIARALASGPEILLCDEATSALDPETT +ILQLLR+INRKLGITIILITHE Sbjct: 178 LSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDINRKLGITIILITHE 237 Query: 241 MSVIREIADQVLVLEQGRIAELGQVWEVFGHPRHAATQALLAPLQQGLPPELQQALQAQP 300 MSVIREIAD+VLVLEQGR+AELG+VW+VFG P+HAAT+ALLAPLQ GLP ELQQALQ Q Sbjct: 238 MSVIREIADRVLVLEQGRVAELGEVWQVFGKPQHAATRALLAPLQHGLPQELQQALQPQA 297 Query: 301 PATEHEREYERVLQLQYRGGDGLEPDLLRIAQALGGKTRLLQANVERIQGHTQGQLYVAL 360 PA H ERVLQL++ GGDGL+PDL RIA LGG+ R+LQA V+ IQGHT GQL +A+ Sbjct: 298 PAGRH----ERVLQLEFHGGDGLQPDLQRIAAVLGGRVRVLQAGVDHIQGHTHGQLVLAV 353 Query: 361 AGVRETPDWQALTQGPQAIAHHIKELGYV 389 A + DW ALTQG QAIAHHIKELGYV Sbjct: 354 ADAPASHDWLALTQGAQAIAHHIKELGYV 382 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 291 bits (744), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 154/343 (44%), Positives = 226/343 (65%), Gaps = 3/343 (0%) Query: 49 KTYTSSAGPVQALQEIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLETPTSGRVEVDGVD 108 + T G V+A++++DL I G IFGIIGRSGAGKS+L+RT+N L PTSGR+ +DG D Sbjct: 5 QAVTQRFGNVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQD 64 Query: 109 LATLNEGQLVDLRRRIGMIFQHFNLLSAKTVFDNVALPLRVAGVPRLQVESRVRELLALV 168 L +L+ QL + RR IGMIFQHFNLLS+++V+DN+ALPL +AG + ++ ++V LL LV Sbjct: 65 LTSLSAAQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAEIAAKVEPLLELV 124 Query: 169 GLADKADTYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTHAILQLLREINR 228 GL D YP ++SGGQKQRVGIARALA+ P++LL DEATSALDPETT +IL+LLR+IN+ Sbjct: 125 GLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLRKINK 184 Query: 229 KLGITIILITHEMSVIREIADQVLVLEQGRIAELGQVWEVFGHPRHAATQALLAP-LQQG 287 +LG+TI+LITH+M VI++I D+V V+E G++ E G+V +VF PRH T+AL+ + Sbjct: 185 ELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLDVFRQPRHEVTRALIGDVIAHE 244 Query: 288 LPPELQQALQAQPPATEHEREYERVLQLQYRGGDGLEPDLLRIAQALGGKTRLLQANVER 347 LP + L+ + + + + + + + G D +P L + +L ++ Sbjct: 245 LPKGVLARLRERLARADAGQGTDHLFRFAFTGNDVDQPHLSEAVRRFNLDFNILHGQIDE 304 Query: 348 IQGHTQGQLYVALAGVRETPDWQALTQGPQAIAHHIKELGYVV 390 IQG G L + G ++ + Q + ++EL +V+ Sbjct: 305 IQGQAFGSLAILANGTQDNINQAMQYLREQGVV--VEELNHVI 345 >gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 336 Score = 285 bits (728), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 163/327 (49%), Positives = 217/327 (66%), Gaps = 16/327 (4%) Query: 49 KTYTSSAGPVQALQEIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLETPTSGRVEVDGVD 108 KTY + + AL++I+L+IA G +FGIIGRSGAGKS+L+RT+N LE P SGRV +DG D Sbjct: 9 KTYRAGQRDIIALRDINLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSGRVLIDGED 68 Query: 109 LATLNEGQLVDLRRRIGMIFQHFNLLSAKTVFDNVALPLRVAG-VPRLQVESRVRELLAL 167 + L L+ LR+R+GM+FQHFNLL+AKTV N+ PL++ G R + +RV ELL L Sbjct: 69 ITGLGHEALLGLRQRVGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAARVDELLQL 128 Query: 168 VGLADKADTYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTHAILQLLREIN 227 VGL D YP +LSGGQKQRVGIARALA+ P +LLCDEATSALDPETT +IL+LL EIN Sbjct: 129 VGLDAHRDQYPSQLSGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSILRLLLEIN 188 Query: 228 RKLGITIILITHEMSVIREIADQVLVLEQGRIAELGQVWEVFGHPRHAATQALLAPLQQG 287 RKLG+TI+LITHEM VIR I D+V VL+ G +AE G+V ++F P+HA T++LL Q Sbjct: 189 RKLGLTIVLITHEMEVIRSICDRVAVLDGGAVAEQGRVVDIFLRPQHAVTRSLLT---QS 245 Query: 288 LPPELQQALQAQPPATEHEREYERVLQLQYRGGDGLEPDLLRIAQALGGKTRLLQANVER 347 + ++L + P ++++L Y G +P L ++ A +++ V R Sbjct: 246 HAWDAGESLYQRRPDG-------KLVRLTYAGDIAAQPILSQLTAATSALATIVRGTVSR 298 Query: 348 IQGHTQGQLYVALAGVRETPDWQALTQ 374 I+ GQL V +G D AL Q Sbjct: 299 IKDTPYGQLLVEFSG-----DADALAQ 320 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 187 bits (475), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 101/245 (41%), Positives = 153/245 (62%), Gaps = 7/245 (2%) Query: 42 VALRGVGKTYTSSAGPVQALQEIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLETPTSGR 101 +A+ V K + G + L+ I L++ PG + IIG+SG+GKS+LLR IN LE+ G Sbjct: 4 IAIDNVKKRF----GDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGN 59 Query: 102 VEVDGVDLATLNEGQLVDLRRRIGMIFQHFNLLSAKTVFDNVAL-PLRVAGVPRLQVESR 160 + V G L +E +L +LR ++GMIFQ FNL +V NV + P+ V GV + Sbjct: 60 ISVAGAKLGA-SELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKT 118 Query: 161 VRELLALVGLADKADTYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTHAIL 220 + L VGL K D YP +LSGGQ+QRV IARAL+ P+ LLCDE TSALDPE + +L Sbjct: 119 AKANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVL 178 Query: 221 QLLREINRKLGITIILITHEMSVIREIADQVLVLEQGRIAELGQVWEVFGHPRHAATQAL 280 ++R + ++ G+T++++THEM RE+ ++++ + QG++ E+G E+FG+P+ Q Sbjct: 179 TVMRGLAKE-GMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQF 237 Query: 281 LAPLQ 285 + Q Sbjct: 238 IGMTQ 242 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 183 bits (465), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 95/235 (40%), Positives = 152/235 (64%), Gaps = 2/235 (0%) Query: 49 KTYTSSAGPVQALQEIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLETPTSGRVEVDGVD 108 K S G + L + L++ G + IIG+SG+GKS+LLR +N LE +G ++V G D Sbjct: 8 KDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIQVCGHD 67 Query: 109 LATLNEGQLVDLRRRIGMIFQHFNLLSAKTVFDNVALPLR-VAGVPRLQVESRVRELLAL 167 + ++ L +LR+++G++FQ +NL TV N+ L L + + Q ++ ++L L Sbjct: 68 IHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTIAHKVLQL 127 Query: 168 VGLADKADTYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTHAILQLLREIN 227 VGL +K D YP +LSGGQ QRV IAR+LA PE++L DE TSALDPE T +L+++ ++ Sbjct: 128 VGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVMEDLA 187 Query: 228 RKLGITIILITHEMSVIREIADQVLVLEQGRIAELGQVWEVFGHPRHAATQALLA 282 R G+T++L+THEM+ R++AD ++ + QG++ E+G E+F HP+ A Q ++ Sbjct: 188 RG-GMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQKFVS 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,172,242 Number of extensions: 48366 Number of successful extensions: 585 Number of sequences better than 1.0e-08: 134 Number of HSP's gapped: 370 Number of HSP's successfully gapped: 150 Length of query: 390 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 303 Effective length of database: 1,207,925 Effective search space: 366001275 Effective search space used: 366001275 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)