BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2458.p
         (220 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311639|ref|YP_003775731.1| metal ion ABC transporter perme...   331   2e-92
gi|300310326|ref|YP_003774418.1| metal ion ABC transporter perme...   190   9e-50
gi|300310888|ref|YP_003774980.1| metal ion ABC transporter perme...   143   1e-35

>gi|300311639|ref|YP_003775731.1| metal ion ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 199

 Score =  331 bits (849), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 186/199 (93%), Positives = 192/199 (96%)

Query: 22  MVGVSGALALVAGVPLAILLIVTAPGGFLAWPRLHRVLGSIINGFRATPFIVLLVALIPL 81
           MV VSGALALVAGVPLA+LLIV+APGGFL WPRLHRVLGS+INGFRATPFIVLLVALIPL
Sbjct: 1   MVSVSGALALVAGVPLAVLLIVSAPGGFLDWPRLHRVLGSVINGFRATPFIVLLVALIPL 60

Query: 82  TRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQALGCKKWHIVRHVY 141
           TRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQALGC+KW IV HVY
Sbjct: 61  TRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQALGCRKWDIVWHVY 120

Query: 142 LPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFDTQVMVIVIALLIL 201
           LPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFDTQVMVIVIA+LI+
Sbjct: 121 LPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFDTQVMVIVIAMLIV 180

Query: 202 LVSLVQRLGDGYVRWLRNR 220
           LVSLVQR GD YVR LRNR
Sbjct: 181 LVSLVQRTGDSYVRRLRNR 199


>gi|300310326|ref|YP_003774418.1| metal ion ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 217

 Score =  190 bits (482), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 115/212 (54%), Positives = 149/212 (70%)

Query: 9   IERYGNALLDTLQMVGVSGALALVAGVPLAILLIVTAPGGFLAWPRLHRVLGSIINGFRA 68
           I+ + ++  +TL MV +SG +  + G+PL I L +T   G L     +R+ G ++N  R+
Sbjct: 6   IDLFVSSFGETLMMVVISGVVGSLLGIPLGIALHITEAKGVLPNVAFNRIAGLLVNAVRS 65

Query: 69  TPFIVLLVALIPLTRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQA 128
           TPFI+LLVA+IP+TR   GT+IG  AAIVPL I+A PF AR+VE +LREVD GLVEAAQA
Sbjct: 66  TPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDHGLVEAAQA 125

Query: 129 LGCKKWHIVRHVYLPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFD 188
           +G   W I+  V +PEA  GIV G TIT V+L+  SAMAGA+G GGLGDL IRYGYQRF 
Sbjct: 126 MGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYGYQRFL 185

Query: 189 TQVMVIVIALLILLVSLVQRLGDGYVRWLRNR 220
            +VM+ V+ +LI+ V LVQ LGD  VR L +R
Sbjct: 186 PEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR 217


>gi|300310888|ref|YP_003774980.1| metal ion ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score =  143 bits (361), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/154 (51%), Positives = 110/154 (71%), Gaps = 1/154 (0%)

Query: 67  RATPFIVLLVALIPLTRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAA 126
           R+ PF++LL+ LIP T  + GT++GV  AI PL I   PFFAR+ E  LRE+D G++EA 
Sbjct: 76  RSVPFLILLIMLIPFTLWLVGTSLGVTGAIPPLVIGTAPFFARLTESVLREIDRGILEAC 135

Query: 127 QALGCKKWHIVRHVYLPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQR 186
            A+G ++  I+    LPEALPG++   TIT + L+S +AM+G +G GGLGDLAIRYGYQR
Sbjct: 136 TAMGARRRQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAIRYGYQR 195

Query: 187 FDTQVMVIVIALLILLVSLVQRLGDGYV-RWLRN 219
           F T+VMV+ +A+L++LV L+Q  GD  V R+ R 
Sbjct: 196 FQTEVMVVTVAILVVLVQLLQFFGDRLVLRFTRK 229


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.144    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 576,542
Number of extensions: 20134
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 8
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 8
Length of query: 220
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,231,600
Effective search space: 169960800
Effective search space used: 169960800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)