BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2454.p (242 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 458 e-130 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 298 2e-82 gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPas... 276 1e-75 gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transpo... 262 2e-71 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 259 1e-70 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 458 bits (1179), Expect = e-130, Method: Compositional matrix adjust. Identities = 224/242 (92%), Positives = 233/242 (96%) Query: 1 MIEVKRISKCFGQHEVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 MIEVKRISKCFG+HEVLKDVSLSVA+GEVVCLIGPSGSGKSTVLRCINGLESYERGDILI Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 61 DGQRVDRDSADIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPVFVNRVPREQARGQAMAL 120 DGQRVDRD DIHRLRTRVGMVFQRFNLFPHRTVLENVTEGP++VN + R QAR +AM+L Sbjct: 61 DGQRVDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQARSEAMSL 120 Query: 121 LEKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 L+KVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR Sbjct: 121 LDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 Query: 181 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGPAAQVLSAPQHARTQDFLRRVI 240 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESG AAQVL+ PQHARTQDFLRRVI Sbjct: 181 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDFLRRVI 240 Query: 241 SK 242 K Sbjct: 241 GK 242 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 298 bits (763), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 144/240 (60%), Positives = 182/240 (75%) Query: 1 MIEVKRISKCFGQHEVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 MI+V ++ K FGQ +L+ + + EVVC+IGPSGSGKST LRC+NGLE GDI I Sbjct: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 Query: 61 DGQRVDRDSADIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPVFVNRVPREQARGQAMAL 120 +G +++ +++ LR +GMVFQRFNLFPH TVLEN+ P+ V ++ R +A A L Sbjct: 61 EGVKLNDPKVNLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKLSRREAVLVAEKL 120 Query: 121 LEKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 L+KVGL + DA+P QLSGGQQQRVAIAR+LAM+P+ +LFDEPTSALDPELVGEVL VM+ Sbjct: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLTVMK 180 Query: 181 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGPAAQVLSAPQHARTQDFLRRVI 240 LA +GMTM+VVTHEMGFAREV+DRV F+ G I+E GP QVL P H RT+DFLR+V+ Sbjct: 181 QLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGDPHHERTRDFLRKVL 240 >gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 276 bits (705), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 146/247 (59%), Positives = 183/247 (74%), Gaps = 5/247 (2%) Query: 1 MIEVKRISKCFGQHEVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 ++EV + K FG H VLKD+ LSVA +VV +IGPSGSGKST LRC+NGLE E G + + Sbjct: 5 IVEVSGLRKSFGAHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGGTVKV 64 Query: 61 DGQRVDRDS-----ADIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPVFVNRVPREQARG 115 G+ V A + LR VGMVFQ FNLFPH TVL+N+T P + + R+ A+ Sbjct: 65 CGRPVVEGGRMMPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMSRKAAQQ 124 Query: 116 QAMALLEKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEV 175 QA+ LLEKVGLA + AYP LSGGQ+QRVAIAR+LAM+P+ +LFDEPTSALDPELVGEV Sbjct: 125 QALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSALDPELVGEV 184 Query: 176 LAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGPAAQVLSAPQHARTQDF 235 L V+R LAA+GMTMI+VTHEMGFAREVAD V + GSIVE+GP + +APQ ART+ F Sbjct: 185 LQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTAPQQARTRSF 244 Query: 236 LRRVISK 242 L+ ++++ Sbjct: 245 LQTMLAR 251 >gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 262 bits (669), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 125/241 (51%), Positives = 173/241 (71%) Query: 1 MIEVKRISKCFGQHEVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 MIE+ +SK +G +VL D S SV +G+VV + GPSGSGKST+++ +NGLE +++G I + Sbjct: 1 MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 Query: 61 DGQRVDRDSADIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPVFVNRVPREQARGQAMAL 120 DG V ++ +LR R+GMVFQ F LFPH ++ EN+T G + V +E+A + + Sbjct: 61 DGVSVGDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGLKY 120 Query: 121 LEKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 L++VGL A D +P QLSGGQQQRVAIAR+L+M P A+LFDEPTSALDPE++ EVL VM Sbjct: 121 LDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 181 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGPAAQVLSAPQHARTQDFLRRVI 240 LA +GMTM+VVTHEMGFAR+VA+RV F+ G +VE + + P+ R +DFL ++I Sbjct: 181 GLAQEGMTMMVVTHEMGFARKVANRVVFMDKGVVVEDCAKDEFFAQPRSERARDFLAKII 240 Query: 241 S 241 + Sbjct: 241 T 241 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 259 bits (662), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 128/236 (54%), Positives = 166/236 (70%) Query: 1 MIEVKRISKCFGQHEVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 +I + + K FG +EVLK +SL V GEV+ +IG SGSGKST+LRCINGLES + G+I + Sbjct: 3 LIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISV 62 Query: 61 DGQRVDRDSADIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPVFVNRVPREQARGQAMAL 120 G ++ ++ LR +VGM+FQ+FNLFPH +V NV P+ V V +A A A Sbjct: 63 AGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAKAN 122 Query: 121 LEKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 LEKVGL + DAYP QLSGGQQQRVAIAR+L+M P+A+L DE TSALDPELV EVL VMR Sbjct: 123 LEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTVMR 182 Query: 181 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGPAAQVLSAPQHARTQDFL 236 LA +GMT+++VTHEM FAREV +R+ F+H G + E GP ++ P+ Q F+ Sbjct: 183 GLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFI 238 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 723,017 Number of extensions: 28963 Number of successful extensions: 576 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 325 Number of HSP's successfully gapped: 147 Length of query: 242 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 159 Effective length of database: 1,226,865 Effective search space: 195071535 Effective search space used: 195071535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)