BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2453.p (430 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310497|ref|YP_003774589.1| glycine/D-amino acid oxidase [H... 743 0.0 gi|300310459|ref|YP_003774551.1| glycine/D-amino acid oxidase [H... 174 1e-44 gi|300309600|ref|YP_003773692.1| glycine/D-amino acid oxidase [H... 157 2e-39 >gi|300310497|ref|YP_003774589.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] Length = 433 Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/433 (85%), Positives = 392/433 (90%), Gaps = 3/433 (0%) Query: 1 MTHDFNAGQQLSLWSATGGEIPVTPPLQASARYDVAIIGAGYTGLSTALHLAEAGVSVCV 60 MT N SLW+AT GE PPLQASARYDVAI+GAGYTGLSTALHLA+AGVSVCV Sbjct: 1 MTKHSNPAFPPSLWAATAGEFSGAPPLQASARYDVAIVGAGYTGLSTALHLAQAGVSVCV 60 Query: 61 LDTHAPGWGASGRNGGQVIPGLKYDPDQLRVMFGSAVADPLIATIGAAADTVFDLIARHG 120 LD HAPGWGASGRNGGQVIPGLKYDPDQLRVMFGSAVADPLIA IG+AADTVFDLIARHG Sbjct: 61 LDAHAPGWGASGRNGGQVIPGLKYDPDQLRVMFGSAVADPLIAAIGSAADTVFDLIARHG 120 Query: 121 IDCDAHRGGWIQPTHSSKVMRALESRARQWMAEGAPAQLMDGAEVARRIGTDAYVGGWKD 180 I+C+A R GWIQPTHS K+MRALE+RARQWMAEGAPAQLMDGAEV RRIGT AYVGGWKD Sbjct: 121 IECEAQRAGWIQPTHSPKMMRALEARARQWMAEGAPAQLMDGAEVTRRIGTGAYVGGWKD 180 Query: 181 ERAGSLHPLKYCRGLARAAQRLGVAIHGNTRVAQLERRQGGWRVH---SAQGPHIDADQV 237 ERAGSLHPLKYCRGLA+AAQRLGV IHG+TRV +LERRQGGWR+H QGPHIDA++V Sbjct: 181 ERAGSLHPLKYCRGLAQAAQRLGVVIHGDTRVTRLERRQGGWRLHGPSGEQGPHIDAERV 240 Query: 238 VLATNGYTDDLWPHLRQSVIAANSFIVATQPLSPQLGASILPAGEVTSDSRRLLLYYRRD 297 VLATNGYTDDLWPHLRQSVIAANSFIVAT+PL P LGASILP GEVTSDSRRLLLYYRRD Sbjct: 241 VLATNGYTDDLWPHLRQSVIAANSFIVATRPLPPALGASILPGGEVTSDSRRLLLYYRRD 300 Query: 298 AQGRLLMGGRGPFGEPRGVDDFAHLERSVALLFPQLAGVSFEYRWSGRVAITRDFMPHVH 357 AQGRLLMGGRGPFGEP+G DFAHLERSVALLFPQLAGV +EYRWSGRVAITRDF+PHVH Sbjct: 301 AQGRLLMGGRGPFGEPQGPADFAHLERSVALLFPQLAGVEYEYRWSGRVAITRDFLPHVH 360 Query: 358 EPAPGLTAAVGYNGRGIAMASTMGRCLAQRLRAQAGAVFPFPVSTISPIPLHGLQRFYIA 417 EPAPGL+ A+GYNGRGIAMA+ MG+ LAQRL AG FPFPVSTI+PIPLHGLQRFYIA Sbjct: 361 EPAPGLSIALGYNGRGIAMATMMGQRLAQRLIGPAGTAFPFPVSTIAPIPLHGLQRFYIA 420 Query: 418 AGVAWYSVLDRFS 430 AGVAWYSVLDRFS Sbjct: 421 AGVAWYSVLDRFS 433 >gi|300310459|ref|YP_003774551.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] Length = 430 Score = 174 bits (440), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 196/389 (50%), Gaps = 20/389 (5%) Query: 12 SLWSATGGEIPVTPPLQASARYDVAIIGAGYTGLSTALHLAEAGVSVCVLDT--HAPGWG 69 S W+ + + ++P A+ DVAI+G G+TGLS AL LA G SV VL+ H Sbjct: 5 SYWTDSA-PLYISPTRDLPAQVDVAIVGGGFTGLSAALALARRGASVVVLEAGPHVAA-E 62 Query: 70 ASGRNGGQVIPGLKYDPDQLRVMFGSAVADPLIATIGAAADTVFDLIARHGIDCDAHRGG 129 ASGRNGG V GL D +L G A A DTV L+ IDCD R G Sbjct: 63 ASGRNGGHVNNGLAVDYAELAAKVGVERARAWYHAYDDAVDTVARLVQEEQIDCDFLRHG 122 Query: 130 WIQPTHSSKVMRALESRARQWMAEGAP--AQLMDGAEVARRIGTDAYVGGWKDERAGSLH 187 ++ M AL+ A + +A+G +++D V + ++ + GG +R+G +H Sbjct: 123 KLKMATRPYQMDALQRSADRLIADGVDLDVEILDAQRVQAEVQSERFHGGLLYKRSGQMH 182 Query: 188 PLKYCRGLARAAQRLGVAIHGNTRVAQLER--RQGGWRVHSAQGPHIDADQVVLAT---- 241 ++ GLA AA+R G AIH T V +LER + G R+H+ +G + A QV+LAT Sbjct: 183 MGRFAYGLAMAAERQGAAIHTGTEVRRLERIGQTHGHRLHTTRGA-VLARQVLLATGASR 241 Query: 242 -NGYTDDLWPHLRQSVIAANSFIVATQPLSPQLGASILPAGEVTSDSRRLLLYYRRDAQG 300 Y W LR+ ++ SFIV T+PL Q A++L + + Y+R Sbjct: 242 HGAYGSFGW--LRRRIVPIGSFIVVTEPLGAQRAATLLKHQRTYTTVANIHHYFRMTPDT 299 Query: 301 RLLMGGRGPFGEPRGVDDFAH---LERSVALLFPQLAGVSFEYRWSGRVAITRDFMPHVH 357 RL+ GGR F D A L R + FPQL V +Y W G V +TRD +P Sbjct: 300 RLVFGGRARFAISSPQSDAASGEVLRRGLHETFPQLGQVRLDYCWGGLVDVTRDRLPQAG 359 Query: 358 EPAPGLTAAVGYNGRGIAMASTMGRCLAQ 386 E GL ++GY+G G M+ MG+C+A+ Sbjct: 360 E-RDGLYYSMGYSGHGTQMSVHMGQCMAK 387 >gi|300309600|ref|YP_003773692.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] Length = 425 Score = 157 bits (397), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 122/394 (30%), Positives = 188/394 (47%), Gaps = 13/394 (3%) Query: 43 TGLSTALHLAEAGVSVCVLDTHAPGWGASGRNGGQVIPGLKYDPDQLRVMFGSAVADPLI 102 TG + AL LA G V V + G ASGRNGG G D L G A+ L Sbjct: 37 TGSAAALALARKGARVVVCEADIVGGAASGRNGGMCNNGFAQDYATLSQRLGVEWANRLY 96 Query: 103 ATIGAAADTVFDLIARHGIDCDAHRGGWI----QPTHSSKVMRALESRARQWMAEGAPAQ 158 A DTV L+ IDC R G + +P H K+ R+ E AR + + Sbjct: 97 RAFDAGVDTVERLVREESIDCSFARHGKLKLAAKPEHVDKLARSQELLARHVDGD---TR 153 Query: 159 LMDGAEVARRIGTDAYVGGWKDERAGSLHPLKYCRGLARAAQRLGVAIHGNTRVAQLERR 218 L+ A++ +G+D Y GG ++ +H +Y RGLA+AAQR G T V +E + Sbjct: 154 LLSRAQLRDELGSDRYHGGLLMHKSAGMHVGRYVRGLAQAAQRRGALYLERTPVLGIEAK 213 Query: 219 QGGWRVHSAQGPHIDADQVVLATNGYTDDLWPHLRQSVIAANSFIVATQPLSPQLGASIL 278 G + V ++ G + A QV+LA+ + +R+ ++ +F++ T+PL L +L Sbjct: 214 NGRYAVRTSAGV-LHAGQVLLASGISQVGPFGWIRRRIVPVGAFLIVTEPLPGALLKQLL 272 Query: 279 PAGEVTSDSRRLLLYYRRDAQGRLLMGGRGPFG--EPRGVDDFAHLERSVAL-LFPQLAG 335 P + +D++ + Y+R RLL GGR F P+ + R+ L +FP LA Sbjct: 273 PTQRMYTDTKNFVNYFRATPDQRLLFGGRARFAASNPQSDARSGEILRAQMLEVFPALAQ 332 Query: 336 VSFEYRWSGRVAITRDFMPHVHEPAPGLTAAVGYNGRGIAMASTMGRCLAQRLRAQAGAV 395 +Y W G V +T D +P + GL ++GY+G G MA+ MG +A+ + A + Sbjct: 333 TRIDYCWGGMVDMTTDRLPRAGQ-RDGLYYSMGYSGHGTHMATLMGSMMAEIMDGHA-EL 390 Query: 396 FPFPVSTISPIPLHGLQRFYIAAGVAWYSVLDRF 429 P+ IP H + +++ AWY + DR Sbjct: 391 NPWKDFDWPAIPGHFGKPWFLPFVGAWYRLKDRL 424 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,573,468 Number of extensions: 73643 Number of successful extensions: 373 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 363 Number of HSP's successfully gapped: 4 Length of query: 430 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 342 Effective length of database: 1,203,190 Effective search space: 411490980 Effective search space used: 411490980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)