BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2452.p
         (469 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310034|ref|YP_003774126.1| transmembrane NAD(P) transhydro...   422   e-119

>gi|300310034|ref|YP_003774126.1| transmembrane NAD(P)
           transhydrogenase subunit beta [Herbaspirillum
           seropedicae SmR1]
          Length = 479

 Score =  422 bits (1085), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/485 (51%), Positives = 323/485 (66%), Gaps = 32/485 (6%)

Query: 5   SLVTTSYIGAIVLFILSLGGLSNPETARRGNVYGIIGMAVAILAT------IFGPHVTMS 58
           +LVT  Y+ A + FI +L GLS+P TARRGN +GI GM +A+L T      I G     S
Sbjct: 4   NLVTLLYLIASICFIQALKGLSHPATARRGNSFGIAGMVIAVLTTLALIVKIKGEGGNPS 63

Query: 59  G-LPYLICAILVGGSIGLIA--ARRIKMTQMPELVALMHSLVGLAASLIGFVSYFSHAES 115
           G + YL+ A  V    G+ A  AR ++MT+MPELVA MHSL+GLAA  I   +       
Sbjct: 64  GDIGYLLVAGGVIVGGGIGAYLARSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEPWAL 123

Query: 116 AAGASSAIL----KVEIYIGVLIGAVTFSGSLIAFGKLAGK-----IGGKPLMLPARHWL 166
              A   ++    +VE++IG  +GA+TFSGS+IAFGKL+GK       G P+    +H+L
Sbjct: 124 GISAHGQLIPVGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVNFAGQHFL 183

Query: 167 NLACLLLMIWLAVDFVGADSTAQGLLPLLIMTGLALLFGIHMVMAIGGADMPVVVSMLNS 226
           NL   + MI   + FV      Q  LP +IM  +A   G+ +++ IGGADMPVVVSMLNS
Sbjct: 184 NLLLAVAMIGFGIIFV----LTQNWLPFIIMAAIAFALGVLIIIPIGGADMPVVVSMLNS 239

Query: 227 YSGWAATATGFILSNDLLIVTGALVGSSGAILSSIMCKAMNRNFLSVI----AGGFGTGA 282
           YSGWAA   GF L+N +LI+ G+LVGSSGAILS IMCKAMNR+F +VI     G      
Sbjct: 240 YSGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGGDAAAAG 299

Query: 283 AKVQGEHAAIAGEVTAISAQDTAGLLKQAKSVIIVPGYGMAVAQAQHTVWEITAFLRERG 342
              Q +    +G     SA D A L+  A++VIIVPGYG+AVA+AQH + E+T  L   G
Sbjct: 300 GGAQQQRNVKSG-----SADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTHNG 354

Query: 343 VNVRFGIHPVAGRMPGHMNVLLAEAKVPYDIVMEMDEINHDFPDTDVAVVIGANDIVNPA 402
           V V++ IHPVAGRMPGHMNVLLAEA+VPYD V EM++IN +F   DV +V+GAND+VNPA
Sbjct: 355 VTVKYAIHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINSEFAQADVVLVLGANDVVNPA 414

Query: 403 AEDDPTSPIAGMPVLQVWKAKCAIVMKRSMASGYAGVDNPLFYRDNTRMLFGDAKKMLDE 462
           A+ DP SPIAGMP+L+ +KAK  IV KRSMA+GYAG+DN LFY D T M+FGDAKK++++
Sbjct: 415 AK-DPKSPIAGMPILEAYKAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVIED 473

Query: 463 VLLAL 467
           ++ A+
Sbjct: 474 MVKAV 478


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,506,850
Number of extensions: 67444
Number of successful extensions: 298
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 380
Effective length of database: 1,198,455
Effective search space: 455412900
Effective search space used: 455412900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)