BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2451.p (528 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310031|ref|YP_003774123.1| NAD(P) transhydrogenase alpha s... 274 1e-74 gi|300310033|ref|YP_003774125.1| transmembrane NAD(P) transhydro... 74 2e-14 >gi|300310031|ref|YP_003774123.1| NAD(P) transhydrogenase alpha subunit [Herbaspirillum seropedicae SmR1] Length = 371 Score = 274 bits (701), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 167/370 (45%), Positives = 246/370 (66%), Gaps = 10/370 (2%) Query: 3 LTVGIPKEIFPEEKRVAASPEMVAKLIALGFPVLMENQAGALANMPDEAFRAAGASIAAS 62 + +GIP E E RVAA+PE V KL+A V++++ AG +++PDEAF A GASI S Sbjct: 1 MRIGIPAESRDGETRVAATPETVKKLVAAKHEVMVQSAAGLKSSIPDEAFVAVGASIG-S 59 Query: 63 PQQVWQAADLIFKVRAPSLAEVALMKEGSTLISFIWPAQNAELMAALAAKRATVLAMDCI 122 V+ A+++ KVRAP AE A +K G+ +I + P +A+ +AA+AA T A++ Sbjct: 60 ADAVF-TAEILLKVRAPDQAERARIKPGTVVIGMLNPF-DADNIAAMAAAGLTAFALEAA 117 Query: 123 PRISRAQKCDALSSMANIAGYRAVIEAANQFGRFFTGQITAAGKVPPAKVFVIGAGVAGL 182 PR +RAQ D LSS ANIAGY+AV+ AAN + RF +TAAG V A++ ++GAGVAGL Sbjct: 118 PRTTRAQSMDVLSSQANIAGYKAVLMAANTYQRFMPMLMTAAGTVKAARMLIMGAGVAGL 177 Query: 183 AALGTAVSLGAVVRANDTRQEVADQIKSMGAEFVGVNYVEE-----GSGGGGYAKVMSEG 237 A+ TA LGAV+ A+D R V +QI+S+GA+F+ V ++ E G GGYA+ M Sbjct: 178 QAIATAKRLGAVIEASDVRPAVKEQIESLGAKFLDVPFLTEEEKEIAQGVGGYARPMPPD 237 Query: 238 YQQAQRQVFAEQAKDVDIIITTALIPGKPAPKLITSEMVQSMRPGSVIVDLAAEQGGNCE 297 + + Q ++ E+AK DIIITTALIPG+ AP LI+ + V++M+PGSVI+D+A +QGGNC Sbjct: 238 WMKRQAELVHERAKQADIIITTALIPGRKAPVLISEDTVKAMKPGSVILDMAVDQGGNCP 297 Query: 298 LTVPGEVVVRHDVTIIGYTDLPSRLSKQSSTLYATNLLRLTEELCKTKDGIILVNMDDEM 357 L+ PG+ V++H V IIG +L + ++ +S LYA N+L +L +G +++N +D++ Sbjct: 298 LSEPGKTVIKHGVHIIGEGNLAALVAADASALYARNVLDFL-KLIIDAEGKLVINREDDI 356 Query: 358 IRGATVLKDG 367 + AT+L G Sbjct: 357 V-AATLLCQG 365 >gi|300310033|ref|YP_003774125.1| transmembrane NAD(P) transhydrogenase subunit alpha [Herbaspirillum seropedicae SmR1] Length = 104 Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/90 (56%), Positives = 63/90 (70%), Gaps = 7/90 (7%) Query: 438 VFILACFVGYMVVWNVTASLHTPLMSVTNAISSIIAIGAMTQVSPALGTSGTPSSYLIFA 497 +F+LA +VGY VVW VT +LHTPLM+VTNAIS+II IGAM A G + P + Sbjct: 12 IFVLAIYVGYHVVWTVTPALHTPLMAVTNAISAIIIIGAML----AAGLTEGPVGRIAGT 67 Query: 498 LAIAGIVLTAVNMFGGFAVTGRMLAMFRKQ 527 LA+A L AVN+FGGF VT RML MF+K+ Sbjct: 68 LAVA---LAAVNVFGGFMVTQRMLEMFKKK 94 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,242,584 Number of extensions: 42023 Number of successful extensions: 227 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 223 Number of HSP's successfully gapped: 2 Length of query: 528 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 438 Effective length of database: 1,193,720 Effective search space: 522849360 Effective search space used: 522849360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)