BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2445.p (242 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein... 63 2e-11 gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herb... 60 2e-10 >gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein] reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 108/207 (52%), Gaps = 21/207 (10%) Query: 3 AIVTGHTRGLGAAIAAELMQREVAVLGLARRRNETLA-QQWPALLHQQVIDLADPGQLLS 61 A+VTG +RG+G AIA EL ++ V+G A + A ++ A L + A G +L+ Sbjct: 11 ALVTGASRGIGRAIATELARQGAKVIGTATSESGAAAITEYLAALGPE----AGRGAVLN 66 Query: 62 WLDGDALSAFLADEAE------VLLINNAATIQPSGALPHQCAQDIAQAVMLNVGAALIL 115 D +A S L ++ + +L+NNA Q A+ + ++ + N+ A L Sbjct: 67 VNDAEA-SVALVEQVQKDFGSLSILVNNAGITQDQLAMRMKD-EEWDSVIATNLTAVGRL 124 Query: 116 S-ARLATLAQARLGCECRILHLSSGAGRQAYPGWSVYGASKAALDHHARAVAQD-GTPGL 173 S A L + +AR G RI++++S G PG Y A+KA + +RA+A++ G+ + Sbjct: 125 SRAVLRGMMKARTG---RIINITSVVGEAGNPGQMNYAAAKAGVAGMSRALAREIGSRNI 181 Query: 174 RICSVAPGVIDTDMQAELRDLPEERFA 200 + VAPG IDTDM R L E++ A Sbjct: 182 TVNCVAPGFIDTDMT---RALNEQQSA 205 >gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 246 Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 16/201 (7%) Query: 3 AIVTGHTRGLGAAIAAELMQREVAVLGLARRRNETLAQQWPALLHQQVIDL-ADPGQLLS 61 A VTG G+G AI L + V+ N T +W A + +Q D+ A G + + Sbjct: 6 AYVTGGMGGIGTAICTRLCKDGYTVV-AGCGPNSTRKDKWLATMREQGFDIHASEGNVSN 64 Query: 62 WLDGDALSAFLADEAEV----LLINNAATIQPSGALPHQCAQDIAQAVMLNVGAALILSA 117 W A AF AE+ +L+NNA I G D + N+ + ++ Sbjct: 65 WESTKA--AFEKVRAEIGEVDVLVNNAG-ITRDGQFRKMSKDDWDAVIDTNLNSLFNVTK 121 Query: 118 R-LATLAQARLGCECRILHLSSGAGRQAYPGWSVYGASKAALDHHARAVAQD-GTPGLRI 175 + + + + G RI+++SS G++ G + Y +KA + A+AQ+ T G+ + Sbjct: 122 QVIEGMCERGFG---RIINISSVNGQKGQFGQTNYSTAKAGIHGFTMALAQEVATKGVTV 178 Query: 176 CSVAPGVIDTDMQAELRDLPE 196 +V+PG I TDM +R PE Sbjct: 179 NTVSPGYIGTDMVRAIR--PE 197 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.134 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 812,999 Number of extensions: 34333 Number of successful extensions: 205 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 206 Number of HSP's successfully gapped: 8 Length of query: 242 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 159 Effective length of database: 1,226,865 Effective search space: 195071535 Effective search space used: 195071535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)