BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2437.p (319 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 373 e-104 gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel A... 273 1e-74 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 209 3e-55 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 209 3e-55 gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 194 8e-51 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 373 bits (957), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/315 (57%), Positives = 235/315 (74%), Gaps = 3/315 (0%) Query: 4 LEVRNLVTQFHTGAGVAKALDDVSFTLEKGKVLGIVGESGSGKSVTAFSLMNLIDAPGRI 63 LEVRNL T F T GV A+DDVS ++ +G++LG+VGESGSGKSVT FS++ ++DAPGRI Sbjct: 6 LEVRNLRTHFFTPEGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGRI 65 Query: 64 SGGEIIFKGENLREASAKRWSQLRGDRIAMVFQDPMMSLNPVMRIGAQLGETIAIHRKAS 123 GGEI+F+G +L +L+G+RIAM+FQDPMM+LNPV+++ AQ+ + + H K S Sbjct: 66 VGGEILFQGRDLVRMDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLAHSKVS 125 Query: 124 RKEIETRVCDALRRVGIPAPEERMRVYPHEMSGGMRQRVAIANAIINHPDLIIADEPTTA 183 R++ D L +GI +PEER++ YPH++SGGMRQRVAIA A+++ PDLIIADEPTTA Sbjct: 126 RQQARELARDTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADEPTTA 185 Query: 184 LDVTIQAQILYEMKQLARESGTALIWITHDISVVKDLADDLCVMYAGRIIERGPVQQVIQ 243 LDVTIQAQIL E+++LAR+ GTALIWITHD+SVV LAD++ VMYAGRI+E+G V V+ Sbjct: 186 LDVTIQAQILSEVQKLARQHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVDAVLD 245 Query: 244 QPLHPYTRGLIDSLPQAEYQGKRLYSIPGATPPLLRLPPGCAFAPRCSRAERACQTIPPV 303 PLHPYT+GLI SLP +G RL IPG TP LL LPP CAFA RC R + C + P Sbjct: 246 APLHPYTQGLIGSLPSNNRRGARLRQIPGMTPNLLHLPPTCAFAARCERLSQQC-LVAPA 304 Query: 304 VAAGGREH--RCFYP 316 ++ H RC++P Sbjct: 305 ISEPLPAHRVRCYHP 319 >gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 334 Score = 273 bits (699), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 143/318 (44%), Positives = 200/318 (62%), Gaps = 6/318 (1%) Query: 3 LLEVRNLVTQFHTGAGVAKALDDVSFTLEKGKVLGIVGESGSGKSVTAFSLMNLIDAPGR 62 LL+V+NL T G+ A+ + F + +G++L +VGESG GKS+T+ +LM L+ + Sbjct: 4 LLDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQ 63 Query: 63 ISGGEIIFKGENLREASAKRWSQLRGDRIAMVFQDPMMSLNPVMRIGAQLGETIAIHRKA 122 S I+F G +L K+ QLRG R+AM+FQ+PM SLNP +G QL E + Sbjct: 64 CSADHILFDGVDLHGMPDKQLMQLRGKRMAMIFQEPMTSLNPSYTLGNQLCEAMLQQPGV 123 Query: 123 SRKEIETRVCDALRRVGIPAPEERMRVYPHEMSGGMRQRVAIANAIINHPDLIIADEPTT 182 SR E R L R GI E+R+R YPH++SGG+RQRV IA +++ +PDLIIADEPTT Sbjct: 124 SRAEARERALYLLHRTGISNAEDRLRQYPHQLSGGLRQRVMIAMSLMCNPDLIIADEPTT 183 Query: 183 ALDVTIQAQILYEMKQLARESGTALIWITHDISVVKDLADDLCVMYAGRIIERGPVQQVI 242 ALDVTIQAQIL +++L +E G A+I+ITHD+ VV +AD + VMYAG+++E V Q+ Sbjct: 184 ALDVTIQAQILRMIRELQQEFGAAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQLF 243 Query: 243 QQPLHPYTRGLIDSLP--QAEYQGKRLYSIPGATPPLLRLPPGCAFAPRCSRAERACQTI 300 QP HPYT+GL++ +P G L +IPG P L+ GCAF RC++A+ C+ Sbjct: 244 AQPRHPYTQGLLNCIPVRGKTLPGSHLQAIPGVVPSLVGQVSGCAFRNRCAKADSGCERD 303 Query: 301 PPVVAAGG----REHRCF 314 P +V G + RC Sbjct: 304 PQMVQQGSVTAPHQARCL 321 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 209 bits (532), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 111/258 (43%), Positives = 159/258 (61%), Gaps = 6/258 (2%) Query: 2 ALLEVRNLVTQFHTGAGVAKALDDVSFTLEKGKVLGIVGESGSGKSVTAFSLMNLIDAPG 61 ALLEV NL +F G +D VSF + G+ +VGESGSGK+V++ ++M L + Sbjct: 4 ALLEVNNLTVRF----GDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQL-NQDA 58 Query: 62 RISGGEIIFKGENLREASAKRWSQLRGDRIAMVFQDPMMSLNPVMRIGAQLGETIAIHRK 121 R G I+ G+++ S ++ Q+RG+ +AM+FQ+PM +LNP+ IG Q+ E + H Sbjct: 59 RYEGS-ILLDGQDVLAKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEG 117 Query: 122 ASRKEIETRVCDALRRVGIPAPEERMRVYPHEMSGGMRQRVAIANAIINHPDLIIADEPT 181 + ++ R L + GIP P R YPHE+SGG RQR IA A+ P L+IADEPT Sbjct: 118 LNARDAARRAVALLEKTGIPEPARRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPT 177 Query: 182 TALDVTIQAQILYEMKQLARESGTALIWITHDISVVKDLADDLCVMYAGRIIERGPVQQV 241 TALDVTIQ QIL + QL RE A++ I+HD+++V+ AD + VM G+++E V ++ Sbjct: 178 TALDVTIQVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESASVAEL 237 Query: 242 IQQPLHPYTRGLIDSLPQ 259 P PYTR L+ S PQ Sbjct: 238 FANPQQPYTRKLLQSRPQ 255 Score = 161 bits (408), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 98/234 (41%), Positives = 140/234 (59%), Gaps = 7/234 (2%) Query: 22 ALDDVSFTLEKGKVLGIVGESGSGKSVTAFSLMNLIDAPGRISGGEIIFKGENLREASAK 81 A+D V L +G+ LGIVGESGSGKS +L+ L A G I F G + E + Sbjct: 292 AVDGVDLQLRRGETLGIVGESGSGKSTLGMALLRLSAAS---VAGSIRFDGVPISERPQR 348 Query: 82 RWSQLRGDRIAMVFQDPMMSLNPVMRIGAQLGETIAIHRKASRKEIETR-VCDALRRVGI 140 LR R+ +VFQDP SL+P + +GE + +H E + + + AL VG+ Sbjct: 349 ELRPLRS-RMQVVFQDPFASLSPRRTVEQIVGEGLELHHPDRSAEQQRQAIVAALEEVGL 407 Query: 141 PAPEERMRVYPHEMSGGMRQRVAIANAIINHPDLIIADEPTTALDVTIQAQILYEMKQLA 200 A + YPHE SGG RQR+AIA A++ P+L++ DEPT+ALDVT+Q Q+L + +L Sbjct: 408 SAAV--LERYPHEFSGGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQQVLQLLAELQ 465 Query: 201 RESGTALIWITHDISVVKDLADDLCVMYAGRIIERGPVQQVIQQPLHPYTRGLI 254 R G A ++ITHD++VV+ +A + VM G+++E G QV+QQP YTR L+ Sbjct: 466 RRHGLAYLFITHDLAVVQAMAHQVIVMKDGKVVESGATAQVLQQPQQEYTRRLV 519 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 209 bits (531), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 119/281 (42%), Positives = 171/281 (60%), Gaps = 13/281 (4%) Query: 3 LLEVRNLVTQFHTGAGVAKALDDVSFTLEKGKVLGIVGESGSGKSVTAFSLMNLID-APG 61 +L+V +L +F T A+ D+SF +++G+ L IVGESGSGKSV++ ++M LI+ G Sbjct: 7 VLDVNHLSVRFSTSERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGG 66 Query: 62 RISGGEIIF---KGENLREASAKRWS--QLRGDRIAMVFQDPMMSLNPVMRIGAQLGETI 116 +I+ G + F G+ L A A + +RG IAM+FQ+PM SLNPV +G Q+ E+I Sbjct: 67 KIASGSMQFLRRSGQRLDLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAESI 126 Query: 117 AIHRKASRKEIETRVCDALRRVGIPAPEERMRVYPHEMSGGMRQRVAIANAIINHPDLII 176 +H+ R + L V IP + + +PH++SGGMRQRV IA A+ P L+I Sbjct: 127 RLHQGLGRAAAQAEALRMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLLI 186 Query: 177 ADEPTTALDVTIQAQILYEMKQLARESGTALIWITHDISVVKDLADDLCVMYAGRIIERG 236 ADEPTTALDVTIQAQIL ++ L +E +I+ITHD+ VV ++AD + VM G +E Sbjct: 187 ADEPTTALDVTIQAQILQLIRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEEN 246 Query: 237 PVQQVIQQPLHPYTRGLIDSLPQAEYQGKRLYSIPGATPPL 277 V + P HPYT+ L+ ++P RL S+ G PL Sbjct: 247 AVNPLFAAPAHPYTQSLLAAVP-------RLGSMRGTDKPL 280 Score = 197 bits (502), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 116/278 (41%), Positives = 170/278 (61%), Gaps = 20/278 (7%) Query: 3 LLEVRNLVTQFHTGAGV-------AKALDDVSFTLEKGKVLGIVGESGSGKSVTAFSLMN 55 +L+VR+L T+F +G+ A++ VSF L G+ L IVGESG GKS T SL+ Sbjct: 312 ILKVRDLTTRFDVKSGIFGRVRQRVHAVEKVSFDLYAGETLAIVGESGCGKSTTGRSLLR 371 Query: 56 LIDAPGRISGGEIIFKGENLREASAKRWSQLRGDRIAMVFQDPMMSLNPVMRIGAQLGET 115 L+D I+GG++ F G +L + QLR D I +FQDP SL+P M +G + E Sbjct: 372 LVD----IAGGKVEFGGRDLAQLPRSELRQLRRD-IQFIFQDPFASLDPRMTVGYSIMEP 426 Query: 116 IAIHRKASRKEIETRVCDALRRVGIPAPEERMRVYPHEMSGGMRQRVAIANAIINHPDLI 175 + +H ++ + RV L RVG+ PE R YPHE SGG RQR+ IA A+ +P ++ Sbjct: 427 MLVH--GMKEGAQERVDALLTRVGL-TPEHGQR-YPHEFSGGQRQRICIARALALNPKIV 482 Query: 176 IADEPTTALDVTIQAQILYEMKQLARESGTALIWITHDISVVKDLADDLCVMYAGRIIER 235 IADE +ALDV+IQAQI+ M L E G + I+I+HD++VV+ ++ + VMY G+I+E Sbjct: 483 IADESVSALDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMYLGQIVEI 542 Query: 236 GPVQQVIQQPLHPYTRGLIDSLPQAE----YQGKRLYS 269 GP + + + P HPYTR L+ ++P A+ GK+L + Sbjct: 543 GPRRAIFENPQHPYTRKLMAAVPVADPTLRQPGKKLLT 580 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 194 bits (493), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 107/287 (37%), Positives = 164/287 (57%), Gaps = 10/287 (3%) Query: 19 VAKALDDVSFTLEKGKVLGIVGESGSGKSVTAFSLMNLIDAPGRISGGEIIFKGENLREA 78 + ALD V + G+V+G+VGESG GKS L+D S G+++ G + Sbjct: 41 ITHALDKVDLKVLPGEVVGLVGESGCGKSTLGRVACGLLDP----SDGQVLVNGRDRASL 96 Query: 79 SAKRWSQLRGDRIAMVFQDPMMSLNPVMRIGAQLGETIAIHRKASRKEIETRVCDALRRV 138 S++ ++ R ++ M+FQ+P SLNP +RI +GE ++ K +++ VC L R Sbjct: 97 SSREEAEAR-LQVQMIFQNPYASLNPRLRIDQIVGEAAQVNGKVE-GDLDDYVCQQLLRA 154 Query: 139 GI-PAPEERMRVYPHEMSGGMRQRVAIANAIINHPDLIIADEPTTALDVTIQAQILYEMK 197 G+ PA +R YPH+ SGG RQR+ IA A+ P +++ DE ALDV+IQAQIL Sbjct: 155 GLDPALRDR---YPHQFSGGQRQRIGIARALAVQPQMLVCDEAVAALDVSIQAQILNLFM 211 Query: 198 QLARESGTALIWITHDISVVKDLADDLCVMYAGRIIERGPVQQVIQQPLHPYTRGLIDSL 257 L E G ++I+HD+ VV+ ++D + +MY GR++E PV ++ QP HPYT+ L+ + Sbjct: 212 DLRAELGLTYLFISHDLGVVEHVSDRVVIMYLGRVVESAPVAELFGQPNHPYTQALLAEV 271 Query: 258 PQAEYQGKRLYSIPGATPPLLRLPPGCAFAPRCSRAERACQTIPPVV 304 P+ + K +I G P L P GC F PRC A + C+ P++ Sbjct: 272 PRMGARKKEFTAIKGEIPSPLNPPTGCHFNPRCPHATQRCREEQPLL 318 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,041,629 Number of extensions: 44520 Number of successful extensions: 487 Number of sequences better than 1.0e-08: 119 Number of HSP's gapped: 358 Number of HSP's successfully gapped: 132 Length of query: 319 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 234 Effective length of database: 1,217,395 Effective search space: 284870430 Effective search space used: 284870430 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)