BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2436.p (329 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 365 e-102 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 248 4e-67 gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter AT... 240 1e-64 gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 190 1e-49 gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel A... 186 3e-48 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 365 bits (936), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/327 (55%), Positives = 234/327 (71%), Gaps = 7/327 (2%) Query: 6 MLTTNELSKSFSLKSSG-LTRVMGKLGLTKPPAQRVYAVNEVSLSIERGEVLGLVGESGC 64 ++ T +S+ F + G L R + G ++PPA +A+++V L + GEV+GLVGESGC Sbjct: 8 LIETRAVSRRFGERRQGWLQRQLQARGWSRPPAI-THALDKVDLKVLPGEVVGLVGESGC 66 Query: 65 GKSTVGRMIAGLLPATSGSLSFEGEDM----TKPSLQTHLNIQMVFQNPYASLNPRQRID 120 GKST+GR+ GLL + G + G D ++ + L +QM+FQNPYASLNPR RID Sbjct: 67 GKSTLGRVACGLLDPSDGQVLVNGRDRASLSSREEAEARLQVQMIFQNPYASLNPRLRID 126 Query: 121 QVISEAAVYHGLVERKNASAFVADLLKQVGLDPSYAGRYPHQFSGGQRQRIAIARALALD 180 Q++ EAA +G VE + +V L + GLDP+ RYPHQFSGGQRQRI IARALA+ Sbjct: 127 QIVGEAAQVNGKVE-GDLDDYVCQQLLRAGLDPALRDRYPHQFSGGQRQRIGIARALAVQ 185 Query: 181 PKFIVCDEAVSALDVSVQAQILNLFMELRETKQLTYLFISHNLAVVEYIADRVAIMYLGR 240 P+ +VCDEAV+ALDVS+QAQILNLFM+LR LTYLFISH+L VVE+++DRV IMYLGR Sbjct: 186 PQMLVCDEAVAALDVSIQAQILNLFMDLRAELGLTYLFISHDLGVVEHVSDRVVIMYLGR 245 Query: 241 IVEIADKRSVFARPNHPYTQALMADAPRLDAKVVDHRPIQGELPSPLNPPAGCTFHPRCP 300 +VE A +F +PNHPYTQAL+A+ PR+ A+ + I+GE+PSPLNPP GC F+PRCP Sbjct: 246 VVESAPVAELFGQPNHPYTQALLAEVPRMGARKKEFTAIKGEIPSPLNPPTGCHFNPRCP 305 Query: 301 RAMLRCSQERPMLRSIGDGHWSACHLN 327 A RC +E+P+LR I GH SACHLN Sbjct: 306 HATQRCREEQPLLREIAPGHMSACHLN 332 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 248 bits (634), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 131/289 (45%), Positives = 184/289 (63%), Gaps = 18/289 (6%) Query: 6 MLTTNELSKSFSLKSSGLTRVMGKLGLTKPPAQRVYAVNEVSLSIERGEVLGLVGESGCG 65 +L +L+ F +KS RV QRV+AV +VS + GE L +VGESGCG Sbjct: 312 ILKVRDLTTRFDVKSGIFGRVR----------QRVHAVEKVSFDLYAGETLAIVGESGCG 361 Query: 66 KSTVGRMIAGLLPATSGSLSFEGEDMTK----PSLQTHLNIQMVFQNPYASLNPRQRIDQ 121 KST GR + L+ G + F G D+ + Q +IQ +FQ+P+ASL+PR + Sbjct: 362 KSTTGRSLLRLVDIAGGKVEFGGRDLAQLPRSELRQLRRDIQFIFQDPFASLDPRMTVGY 421 Query: 122 VISEAAVYHGLVERKNASAFVADLLKQVGLDPSYAGRYPHQFSGGQRQRIAIARALALDP 181 I E + HG+ ++ A V LL +VGL P + RYPH+FSGGQRQRI IARALAL+P Sbjct: 422 SIMEPMLVHGM--KEGAQERVDALLTRVGLTPEHGQRYPHEFSGGQRQRICIARALALNP 479 Query: 182 KFIVCDEAVSALDVSVQAQILNLFMELRETKQLTYLFISHNLAVVEYIADRVAIMYLGRI 241 K ++ DE+VSALDVS+QAQI+NL ++L+ ++++FISH++AVVE I+ RVA+MYLG+I Sbjct: 480 KIVIADESVSALDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMYLGQI 539 Query: 242 VEIADKRSVFARPNHPYTQALMADAPRLDAKVVD--HRPIQGELPSPLN 288 VEI +R++F P HPYT+ LMA P D + + + E+PSP+ Sbjct: 540 VEIGPRRAIFENPQHPYTRKLMAAVPVADPTLRQPGKKLLTDEIPSPIR 588 Score = 159 bits (402), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 97/259 (37%), Positives = 144/259 (55%), Gaps = 19/259 (7%) Query: 40 VYAVNEVSLSIERGEVLGLVGESGCGKSTVGRMIAGLL-----PATSGSLSF-------- 86 V AV ++S +++GE L +VGESG GKS I L+ SGS+ F Sbjct: 24 VDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGGKIASGSMQFLRRSGQRL 83 Query: 87 ---EGEDMTKPSLQTHLNIQMVFQNPYASLNPRQRIDQVISEAAVYHGLVERKNASAFVA 143 + ++ T S++ I M+FQ P SLNP + + I+E+ H + R A A Sbjct: 84 DLAQADNATMRSIRG-AEIAMIFQEPMTSLNPVFTVGEQIAESIRLHQGLGRAAAQAEAL 142 Query: 144 DLLKQVGLDPS--YAGRYPHQFSGGQRQRIAIARALALDPKFIVCDEAVSALDVSVQAQI 201 +L+ V + + GR+PHQ SGG RQR+ IA AL+ P ++ DE +ALDV++QAQI Sbjct: 143 RMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLLIADEPTTALDVTIQAQI 202 Query: 202 LNLFMELRETKQLTYLFISHNLAVVEYIADRVAIMYLGRIVEIADKRSVFARPNHPYTQA 261 L L L++ Q+ +FI+H++ VV +ADRV +M G VE +FA P HPYTQ+ Sbjct: 203 LQLIRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEENAVNPLFAAPAHPYTQS 262 Query: 262 LMADAPRLDAKVVDHRPIQ 280 L+A PRL + +P++ Sbjct: 263 LLAAVPRLGSMRGTDKPLR 281 >gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 240 bits (613), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 125/254 (49%), Positives = 172/254 (67%), Gaps = 3/254 (1%) Query: 15 SFSLKSSGLTRVMG-KLGLTKPPAQRVYAVNEVSLSIERGEVLGLVGESGCGKSTVGRMI 73 +L+ LT+V K GL +PP Q + AVN+VSL + RGE LGLVGESGCGKST+ +M+ Sbjct: 13 DIALELCALTKVYPLKRGLFQPPGQ-LKAVNDVSLRLYRGETLGLVGESGCGKSTLAKML 71 Query: 74 AGLLPATSGSLSFEGEDMTKPSLQTHL-NIQMVFQNPYASLNPRQRIDQVISEAAVYHGL 132 GLLP TSG++ G+++ + H +IQ +FQ+PY+SLNPR+ + +++ HG+ Sbjct: 72 LGLLPPTSGNVLINGQEVDPTERKAHARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLHGI 131 Query: 133 VERKNASAFVADLLKQVGLDPSYAGRYPHQFSGGQRQRIAIARALALDPKFIVCDEAVSA 192 + V D+L VG+ +YP+Q SGGQRQR+AIARAL L P ++CDE SA Sbjct: 132 GNAAERNRQVKDILDLVGMPERTHAQYPNQLSGGQRQRVAIARALILRPDILICDEPTSA 191 Query: 193 LDVSVQAQILNLFMELRETKQLTYLFISHNLAVVEYIADRVAIMYLGRIVEIADKRSVFA 252 LDVSVQAQILNL ++L+ LTYLFISH+L VVE++ DRVA+M G IVE+ + +F+ Sbjct: 192 LDVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNQGSIVELQSREQLFS 251 Query: 253 RPNHPYTQALMADA 266 P H YT+ L+A A Sbjct: 252 EPQHLYTRMLLASA 265 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 190 bits (483), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 112/276 (40%), Positives = 155/276 (56%), Gaps = 11/276 (3%) Query: 42 AVNEVSLSIERGEVLGLVGESGCGKSTVGRMIAGLLPA----TSGSLSFEGED---MTKP 94 AV++VSLS+ RG +LGLVGESG GKS G I G++ A G + F+G D M K Sbjct: 24 AVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGRIVGGEILFQGRDLVRMDKT 83 Query: 95 SLQTHLN--IQMVFQNPYASLNPRQRIDQVISEAAVYHGLVERKNASAFVADLLKQVGLD 152 SL+ I M+FQ+P +LNP +++ + +A + H V R+ A D L +G+ Sbjct: 84 SLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLAHSKVSRQQARELARDTLGMMGIA 143 Query: 153 P--SYAGRYPHQFSGGQRQRIAIARALALDPKFIVCDEAVSALDVSVQAQILNLFMELRE 210 YPHQ SGG RQR+AIA A+ P I+ DE +ALDV++QAQIL+ +L Sbjct: 144 SPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADEPTTALDVTIQAQILSEVQKLAR 203 Query: 211 TKQLTYLFISHNLAVVEYIADRVAIMYLGRIVEIADKRSVFARPNHPYTQALMADAPRLD 270 ++I+H+L+VV +AD VA+MY GRIVE +V P HPYTQ L+ P + Sbjct: 204 QHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVDAVLDAPLHPYTQGLIGSLPSNN 263 Query: 271 AKVVDHRPIQGELPSPLNPPAGCTFHPRCPRAMLRC 306 + R I G P+ L+ P C F RC R +C Sbjct: 264 RRGARLRQIPGMTPNLLHLPPTCAFAARCERLSQQC 299 >gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 645 Score = 186 bits (472), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 116/327 (35%), Positives = 183/327 (55%), Gaps = 22/327 (6%) Query: 18 LKSSGLTRVMG---KLGLTKPPAQRVYAVNEVSLSIERGEVLGLVGESGCGKSTVGRMIA 74 L+ SGL G +LGL P R+ +++++L+I+RG +G++GESG GK+T+ R +A Sbjct: 309 LRISGLVAGYGAPDRLGL---PGVRI--LDDINLTIQRGSTVGIIGESGSGKTTLARAVA 363 Query: 75 GLLPATSGSLSFEGEDMTKPSLQTHLN-----IQMVFQNPYASLNPRQRIDQVISEA-AV 128 G++ GS+ +GE ++ P+L+ +Q+VFQN +LNP I ++++ + Sbjct: 364 GMIAPARGSIQLDGETLS-PTLEGRTREQFRRVQIVFQNADTALNPSHSIGRILNRPLSF 422 Query: 129 YHGLVERKNASAFVADLLKQVGLDPSYAGRYPHQFSGGQRQRIAIARALALDPKFIVCDE 188 YHGL + + A+LL V L + R P + SGGQ+QR+ +ARALA P I+CDE Sbjct: 423 YHGL-KGEAMRRRTAELLDLVQLPATVIDRLPAELSGGQKQRVNLARALAAKPDLILCDE 481 Query: 189 AVSALDVSVQAQILNLFMELRETKQLTYLFISHNLAVVEYIADRVAIMYLGRIVEIADKR 248 SALD V A IL L ELR Q++Y+FISH+++ V I D + ++Y GR+V + Sbjct: 482 VTSALDTVVAAAILELLAELRRELQVSYMFISHDISTVRAICDDIVVLYAGRMVANRPRE 541 Query: 249 SVFARPNHPYTQALMADAPRLDAKVVDHRPIQGELPSP----LNP-PAGCTFHPRCP-RA 302 ++ A P HPY+ L++ P + ++ G+ P ++P P C F PRC R Sbjct: 542 AMMAPPYHPYSHLLLSSVPAMQQGWLEQVAGAGQHKLPPIGAVDPSPDICAFLPRCAQRV 601 Query: 303 MLRCSQERPMLRSIGDGHWSACHLNGA 329 C+ P R++ G CH + A Sbjct: 602 DGVCNVVPPRRRNMEHGGEILCHRSDA 628 Score = 126 bits (316), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 147/278 (52%), Gaps = 18/278 (6%) Query: 23 LTRVMG-KLGLTKPPAQRVYAVNEVSLSIERGEVLGLVGESGCGKSTVGRMIAGLLPA-- 79 L V G ++ K +V V V+ ++ RGEVL L+GESG GK+T+ + G A Sbjct: 28 LVEVQGLRVNARKEDGSQVEIVKNVNFTVARGEVLALIGESGSGKTTIALSLLGYARAGC 87 Query: 80 -TSGSLSFEGEDMTKPSLQTHL------NIQMVFQNPYASLNP-RQRIDQVISEAAVYHG 131 +G GE + L ++ + Q+ A+ NP R +DQVI E+A+ HG Sbjct: 88 HIAGGQVRIGERQIDQMDEKALLAMRGHHVAYIAQSAAAAFNPARTLMDQVI-ESALQHG 146 Query: 132 LVERKNASAFVADLLKQVGL-DPSYAG-RYPHQFSGGQRQRIAIARALALDPKFIVCDEA 189 ++++ +A +L + + L +P G RYPHQ SGGQ QR+ A AL P+ ++ DE Sbjct: 147 VMDKASAMRKAVELFRALALPNPDKIGERYPHQVSGGQLQRVMAAMALVTGPELVILDEP 206 Query: 190 VSALDVSVQAQILNLFMELRETKQLTYLFISHNLAVVEYIADRVAIMYLGRIVEIADKRS 249 +ALDV+ Q ++L F + + T +++SH+LAVV +ADR+ ++ G + E Sbjct: 207 TTALDVTTQIEVLRAFKNVVKELGTTAVYVSHDLAVVAQMADRIIVLRDGAVRETGSTSQ 266 Query: 250 VFARPNHPYTQALMADAPRLDAKVVDHRPIQGELPSPL 287 V P YTQ L+A A A+VV R I LP+ L Sbjct: 267 VLHAPADSYTQCLLAAASPA-ARVVQLREI---LPATL 300 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 916,716 Number of extensions: 36173 Number of successful extensions: 444 Number of sequences better than 1.0e-08: 117 Number of HSP's gapped: 312 Number of HSP's successfully gapped: 127 Length of query: 329 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 243 Effective length of database: 1,212,660 Effective search space: 294676380 Effective search space used: 294676380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)