BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2428.p
         (140 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310110|ref|YP_003774202.1| hypothetical protein Hsero_0775...    72   2e-14

>gi|300310110|ref|YP_003774202.1| hypothetical protein Hsero_0775
           [Herbaspirillum seropedicae SmR1]
          Length = 139

 Score = 71.6 bits (174), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/128 (42%), Positives = 73/128 (57%), Gaps = 11/128 (8%)

Query: 15  PTGAEMDSFSSTLKNASSGDLLKALGKDGMEPWQKDAIVKELENRAQQAQKSDSNNGANG 74
           P+ +++D F   L+  S+ DL+K L       WQKDAI++EL+NRA ++  S    GA G
Sbjct: 21  PSQSQIDGFKQGLQGKSNEDLMKGLMDPNTAQWQKDAIMQELQNRADKSGGSQGAGGAGG 80

Query: 75  ANGGGGGGGGDDDDIKKLLKKLTKGTISPQEEQKLAGALGVDTKTLDAAKGGDAGGDSG- 133
                      DDDI+KLLKKL  G+IS +E +KLAG +G+  + L A KG   G   G 
Sbjct: 81  G---------GDDDIQKLLKKLMDGSISDEELKKLAGLMGMKPEDLQAIKGAVQGEGVGE 131

Query: 134 -GGDIKGG 140
             GDI GG
Sbjct: 132 QQGDISGG 139


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.302    0.127    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 220,555
Number of extensions: 5036
Number of successful extensions: 19
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 64
Effective length of database: 1,260,010
Effective search space: 80640640
Effective search space used: 80640640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 126 (53.1 bits)