BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2421.p
         (147 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310114|ref|YP_003774206.1| hypothetical protein Hsero_0779...    92   1e-20

>gi|300310114|ref|YP_003774206.1| hypothetical protein Hsero_0779
           [Herbaspirillum seropedicae SmR1]
          Length = 168

 Score = 92.4 bits (228), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/131 (42%), Positives = 76/131 (58%), Gaps = 4/131 (3%)

Query: 17  ERVSRLLRELIGLTGQPDATVATLELQLGEIFTRTLIDPETPDRHLAITALLPRCEQPHY 76
           + V +LL +L+    Q  A    LELQ+GEIFTRT ++P   D +L +TA LP    P  
Sbjct: 40  QEVKQLLLDLMQYCDQQTAARPALELQIGEIFTRTSVEPAGVDLYLCVTATLPPVGAPA- 98

Query: 77  LPRMFSPPGAPPLPP--QTDFLWHADQGCYIVVQRIAVAELPDERSIMDAILMTADIARD 134
              + +PP A    P    DFLWHAD+G Y++V+++ +  L DERS+MD IL TAD+A  
Sbjct: 99  -TALLTPPAALEAAPINSIDFLWHADEGRYVLVRKVPLRLLTDERSVMDEILATADLAAS 157

Query: 135 YHLAINASAAS 145
               I A A S
Sbjct: 158 CAQEIAADAKS 168


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 493,218
Number of extensions: 19858
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,255,275
Effective search space: 87869250
Effective search space used: 87869250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)